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melange:papers:spring2015 [2015/02/18 14:53] waruna |
melange:papers:spring2015 [2016/08/30 13:00] swetha |
| @INPROCEEDINGS{6012857, |
| author={de O Sandes, E. F. and de Melo, A. C. M. A.}, |
| booktitle={Parallel Distributed Processing Symposium (IPDPS), 2011 IEEE International}, |
| title={Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space}, |
| year={2011}, |
| month=may, |
| pages={1199-1211}, |
| keywords={bioinformatics;cellular biophysics;coprocessors;parallel algorithms;GPU;GTX 285 Board;Myers-Miller algorithm;Smith-Waterman alignment;ancestral relationships;bioinformatics;cross-species chromosome alignments;high performance computing platform;linear space complexity;parallel algorithm;species peculiarity identification;Bioinformatics;Computer architecture;Graphics processing unit;Heuristic algorithms;Instruction sets;Mathematical model;Microprocessors}, |
| doi={10.1109/IPDPS.2011.114}, |
| ISSN={1530-2075},} |
| |
@article{Luporini:2015:COA:2695583.2687415, | @article{Luporini:2015:COA:2695583.2687415, |
author = {Luporini, Fabio and Varbanescu, Ana Lucia and Rathgeber, Florian and Bercea, Gheorghe-Teodor and Ramanujam, J. and Ham, David A. and Kelly, Paul H. J.}, | author = {Luporini, Fabio and Varbanescu, Ana Lucia and Rathgeber, Florian and Bercea, Gheorghe-Teodor and Ramanujam, J. and Ham, David A. and Kelly, Paul H. J.}, |
doi={10.1109/ASAP.2000.862383}, | doi={10.1109/ASAP.2000.862383}, |
ISSN={2160-0511},} | ISSN={2160-0511},} |
| |
| @ARTICLE{595572, |
| author={Andonov, R. and Rajopadhye, S.}, |
| journal={Parallel and Distributed Systems, IEEE Transactions on}, |
| title={Knapsack on VLSI: From algorithm to optimal circuit}, |
| year={1997}, |
| month={jun}, |
| volume={8}, |
| number={6}, |
| pages={545-561}, |
| keywords={VLSI;application specific integrated circuits;logic design;parallel algorithms;systolic arrays;NP-hard problem;application specific VLSI design;correctness preserving transformations;dynamic dependencies;linear systolic array;model of computation;nonlinear discrete optimization;parallel solution;recurrence equations;space-time transformations;systolic arrays;systolic synthesis;unbounded knapsack problem;Circuits;Computational modeling;Control system synthesis;Difference equations;NP-hard problem;Nonlinear equations;Phase change random access memory;Sufficient conditions;Systolic arrays;Very large scale integration}, |
| doi={10.1109/71.595572}, |
| ISSN={1045-9219},} |
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