This site contains a list of bioinformatic tools and resources that were developed at Colorado State University. The tools range from combinatorial methods used to correct genome assembly to machine learning methods that predict RNA-protein binding. The overarching goal in the development of all the available tools is to better understand and analyze complex omics (genomics, transcriptomics, proteomics, and metabolomics) datasets.

Tools

SEQLandscape
An application allowing the generation and visualization of a sequence landscape.
aPPRove
A computational tool that predicts the interaction of a PPR with its RNA binding site.
SEQStratus
On-Demand Assembly in the Cloud.
misSEQuel
An application for misassembly detection in draft genomes.

News

22.10.2014 misSEQuel v1.0 released.

01.10.2014 SEQLandscape v1.0 released.

01.10.2014 New website launched.