Computes the maximal sequence landscape of a target string with respect to some source string.
Please see the following papers for definitions of sequence landscape and maximal sequence landscape:



Usage: ml source-file target-file output-file 
where source and target files are in FASTA format and contain a single string 
(if there are multiple strings then first string is considered). The output is a 
single column table that row i indicates the height of the maximal landscape in 
position i of the taret string.