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April 25, 2013, at 12:17 PM MST by 129.82.44.223 -
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Lab 14

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Lab 13

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May 03, 2010, at 11:10 AM MST by 10.84.44.68 -
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Plotting with matplotlib

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Plotting with matplotlib

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Use matplotlib to display generate a plot of GC content along the genome. Each point should represent the average GC content in a window of 5000 nucleotides centered around a given position in the genome.

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Use matplotlib to generate a plot of GC and AT content along the genome. Each point should represent the average GC or AT content in a window of 20000 nucleotides centered around a given position in the genome. How would you explain what you're seeing?

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May 03, 2010, at 10:54 AM MST by 10.84.44.68 -
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Use matplotlib to display generate a plot of GC content along the genome. Each point should represent the average GC content in a window of 200 nucleotides centered around a given position in the genome.

to:

Use matplotlib to display generate a plot of GC content along the genome. Each point should represent the average GC content in a window of 5000 nucleotides centered around a given position in the genome.

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May 03, 2010, at 10:53 AM MST by 10.84.44.68 -
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Lab 14

Plotting with matplotlib

In this lab we will plot the GC content of along the genome of the Haemophilus influenzae virus. You can download the sequence of H. influenzae from genbank. Use matplotlib to display generate a plot of GC content along the genome. Each point should represent the average GC content in a window of 200 nucleotides centered around a given position in the genome.

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