CS646: Machine learning in bioinformatics - Schedule

April 28, 2012, at 08:06 AM MST by 76.25.21.194 -

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!!Week 14:

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!!Week 16:

'''Tuesday, 5/1'''\\
Ong, CS and Zien, A.
[[http://www.fml.tuebingen.mpg.de/raetsch/projects/protsubloc/protsubloc-wabi08.pdf | An Automated Combination of Kernels for Predicting Protein Subcellular Localization]]. In: Proceedings of the 8th Workshop on Algorithms in Bioinformatics (WABI), pp. 186-179, Springer. Lecture Notes in Bioinformatics.

'''Thursday, 5/3'''\\
No class - we will meet during finals week for class presentations instead.

!!Week 15:

April 23, 2012, at 12:57 PM MST by 129.82.44.193 -

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!!Week 14:

'''Tuesday, 4/24'''\\
We will continue the discussion of the Thursday paper.

'''Thursday, 4/26'''\\
Borgwardt K.M., Ong C.S., Schönauer S., Vishwanathan S.V.N., Smola A.J., Kriegel H.-P. [[http://bioinformatics.oxfordjournals.org/cgi/reprint/21/suppl_1/i47?ijkey=n5JLz4qLED1ghaN&keytype=ref|Protein Function Prediction via Graph Kernels]].
Intelligent Systems in Molecular Biology" (ISMB 2005), Detroit, USA, 2005 and
Bioinformatics 2005 21(suppl_1):i47-i56.

April 18, 2012, at 01:06 PM MST by 129.82.44.229 -

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'''Thursday, 4/19'''\\
P. Kuksa, P.H. Huang, and V. Pavlovic. [[http://www.biomedcentral.com/1471-2105/10/S4/S2 |Efficient use of unlabeled data for protein sequence classification: a comparative study]].

April 14, 2012, at 06:17 PM MST by 76.25.21.194 -

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G. Schweikert, C. Widmer, B. Schölkopf et al.[[http://www.fml.tuebingen.mpg.de/raetsch/suppl/genomedomainadaptation/nips.pdf|An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis]]. ~~1433-1440.~~ In: Advances in Neural Information Processing

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G. Schweikert, C. Widmer, B. Schölkopf et al.[[http://www.fml.tuebingen.mpg.de/raetsch/suppl/genomedomainadaptation/nips.pdf|An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis]]. In: Advances in Neural Information Processing

April 14, 2012, at 06:16 PM MST by 76.25.21.194 -

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G. Schweikert, C. Widmer, B. Schölkopf et al.
[[http://www.fml.tuebingen.mpg.de/raetsch/suppl/genomedomainadaptation/nips.pdf|An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence
Analysis]]. 1433-1440. In: Advances in Neural Information Processing

to:

G. Schweikert, C. Widmer, B. Schölkopf et al.[[http://www.fml.tuebingen.mpg.de/raetsch/suppl/genomedomainadaptation/nips.pdf|An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis]]. 1433-1440. In: Advances in Neural Information Processing

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!!Week 14:

'''Tuesday, 4/17'''\\
G. Schweikert, C. Widmer, B. Schölkopf et al.
[[http://www.fml.tuebingen.mpg.de/raetsch/suppl/genomedomainadaptation/nips.pdf|An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence
Analysis]]. 1433-1440. In: Advances in Neural Information Processing
Systems (NIPS) 21, 2009.

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'''Thursday, 4/12'''\\
Michael Hamilton, A.S.N. Reddy, and Asa Ben-Hur.
Towards a plant splicing code: conserved splicing regulatory elements from SVM-weighted features.

April 06, 2012, at 11:54 AM MST by 129.82.44.229 -

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Xiaojin Zhu and Andrew B. Goldberg. [[http://www.morganclaypool.com/doi/abs/10.2200/S00196ED1V01Y200906AIM006
| Introduction to Semi-Supervised Learning]]. Morgan & Claypool, 2009.

to:

Xiaojin Zhu and Andrew B. Goldberg. [[http://www.morganclaypool.com/doi/abs/10.2200/S00196ED1V01Y200906AIM006| Introduction to Semi-Supervised Learning]]. Morgan & Claypool, 2009.

April 06, 2012, at 11:54 AM MST by 129.82.44.229 -

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!!Week 13:

'''Tuesday, 4/10'''\\

Read chapters 2 and 6 in:
Xiaojin Zhu and Andrew B. Goldberg. [[http://www.morganclaypool.com/doi/abs/10.2200/S00196ED1V01Y200906AIM006
| Introduction to Semi-Supervised Learning]]. Morgan & Claypool, 2009.

March 31, 2012, at 01:02 PM MST by 76.25.21.194 -

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!!Week 12:

'''Tuesday, 4/3'''\\

A. Ben-Hur and W.S. Noble. [[http://www.cs.colostate.edu/~asa/pdfs/sppii.pdf | Kernel methods for predicting protein-protein interactions]]. In: Proceedings, thirteenth international conference on intelligent systems for molecular biology. Bioinformatics 21(Suppl. 1): i38-i46, 2005.

'''Thursday, 4/5'''\\

F. ul Amir Afsar Minhas and A. Ben-Hur.
Multiple instance learning of Calmodulin binding sites.
Submitted.

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March 27, 2012, at 09:50 AM MST by 129.82.44.229 -

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'''Thursday, 3/29'''\\

We will continue to discuss the paper\\
A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.

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~~!!Week 10:~~

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!!Week 10:

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!!Week 11:

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'''Tuesday, 3/27'''\\

Wei Bi and James Kwok. [[http://www.icml-2011.org/papers/10_icmlpaper.pdf | Multi-Label Classification on Tree- and DAG-Structured Hierarchies]]. International Conference on Machine Learning (ICML-11), 2011. (Indika)

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Wei Bi and James Kwok. [[http://www.icml-2011.org/papers/10_icmlpaper.pdf | Multi-Label Classification on Tree- and DAG-Structured Hierarchies]]. International Conference on Machine Learning (ICML-11), 2011. (Indika)

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Y. Sun, S. Todorovic, and S. Goodison. [[http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.163.2272|Local Learning Based Feature Selection for High Dimensional Data Analysis]]. IEEE Trans. on Pattern Analysis and Machine Intelligence (TPAMI), vol. 32, no. 9, pp. 1610-1626, 2010. (Nand)

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Y. Sun, S. Todorovic, and S. Goodison. [[http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.163.2272|Local Learning Based Feature Selection for High Dimensional Data Analysis]]. IEEE Trans. on Pattern Analysis and Machine Intelligence (TPAMI), vol. 32, no. 9, pp. 1610-1626, 2010. (Nand)\\
Wei Bi and James Kwok. [[http://www.icml-2011.org/papers/10_icmlpaper.pdf | Multi-Label Classification on Tree- and DAG-Structured Hierarchies]]. International Conference on Machine Learning (ICML-11), 2011. (Indika)

March 19, 2012, at 10:52 AM MST by 129.82.44.229 -

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!!Week 10:

'''Tuesday, 3/20'''\\
Hui Zou and Trevor Hastie. [[http://onlinelibrary.wiley.com/doi/10.1111/j.1467-9868.2005.00503.x/full | Regularization and Variable Selection via the Elastic Net]]. JRSSB (2005) 67(2) 301-320. An R package elasticnet is available from CRAN. (Majdi)\\
Feiping Nie, Heng Huang, Cai Xiao, Chris Ding. [[http://books.nips.cc/papers/files/nips23/NIPS2010_1149.pdf | Efficient and Robust Feature Selection via Joint L2,1-Norms Minimization]]. NIPS 2010. (Rehab)

'''Thursday, 3/22'''\\

Y. Sun, S. Todorovic, and S. Goodison. [[http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.163.2272|Local Learning Based Feature Selection for High Dimensional Data Analysis]]. IEEE Trans. on Pattern Analysis and Machine Intelligence (TPAMI), vol. 32, no. 9, pp. 1610-1626, 2010. (Nand)

!!Week 9:

Spring break

February 28, 2012, at 10:50 AM MST by 129.82.44.229 -

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'''Tuesday, 3/6'''

* Chris Ding and Hanchuan Peng. [[ http://ranger.uta.edu/~chqding/papers/mRMR_JBCB.pdf | Minimum redundancy feature selection from microarray gene expression data]]. Journal of Bioinformatics and Computational Biology, Vol. 3, No. 2, pp.185-205, 2005. (Joel)
* Yeung K, Bumgarner R. [[http://genomebiology.com/2003/4/12/r83 | Multiclass classification of microarray data with repeated measurements: application to cancer]]. Genome Biology. 4:R83, 2003. (Simon)

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'''Tuesday, 3/6'''\\
Chris Ding and Hanchuan Peng. [[ http://ranger.uta.edu/~chqding/papers/mRMR_JBCB.pdf | Minimum redundancy feature selection from microarray gene expression data]]. Journal of Bioinformatics and Computational Biology, Vol. 3, No. 2, pp.185-205, 2005. (Joel)\\
Yeung K, Bumgarner R. [[http://genomebiology.com/2003/4/12/r83 | Multiclass classification of microarray data with repeated measurements: application to cancer]]. Genome Biology. 4:R83, 2003. (Simon)

February 28, 2012, at 10:49 AM MST by 129.82.44.229 -

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'''Tuesday, 3/6'''

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!!Week 8:

'''Tuesday, 3/6'''\\
* Chris Ding and Hanchuan Peng. [[ http://ranger.uta.edu/~chqding/papers/mRMR_JBCB.pdf | Minimum redundancy feature selection from microarray gene expression data]]. Journal of Bioinformatics and Computational Biology, Vol. 3, No. 2, pp.185-205, 2005. (Joel)
* Yeung K, Bumgarner R. [[http://genomebiology.com/2003/4/12/r83 | Multiclass classification of microarray data with repeated measurements: application to cancer]]. Genome Biology. 4:R83, 2003. (Simon)

'''Thursday, 3/8'''\\
Ji Zhu, Saharon Rosset, Trevor Hastie and Rob Tibshirani. [[http://www.stat.lsa.umich.edu/~jizhu/pubs/Zhu-NIPS04.pdf | 1-norm support vector machines]]. In: Neural Information Processing Systems (NIPS) 16, 2004. 1-norm classifiers create very sparse representations, so are useful for feature selection. (Prathamesh)

February 26, 2012, at 01:55 PM MST by 76.25.21.194 -

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!!Week 7:

'''Tuesday, 2/28'''\\
''Lecture:'' Discussion of evaluation of feature selection; model selection; more discussion of kernels\\

'''Thursday, 3/1'''\\
''Lecture:'' Protein function prediction.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.

February 20, 2012, at 10:50 AM MST by 129.82.44.229 -

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''Lecture:'' Embedded feature selection methods (from the notes) and discussion of experimental issues in feature selection and model selection.

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''Lecture:'' Embedded feature selection methods (from the notes) and discussion of experimental issues in feature selection and model selection.\\

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!!Week 6:

'''Tuesday, 2/21'''\\
''Lecture:'' Embedded feature selection methods (from the notes) and discussion of experimental issues in feature selection and model selection.
''Reading:'' C Ambroise and GJ McLachlan. [[http://www.pnas.org/content/99/10/6562.full.pdf | Selection bias in gene extraction on the basis of microarray gene-expression data]]. PNAS 99 (10) 6562-6566, 2002.

'''Thursday, 2/23'''\\
''Lecture:'' Discussion of NIPS 2003 feature selection competition. \\
''Reading:'' I. Guyon, S.R. Gunn, A. Ben-Hur and G. Dror. [[http://books.nips.cc/papers/files/nips17/NIPS2004_0194.pdf | Results analysis of the NIPS 2003 feature selection challenge]]. Advances in Neural Information Processing Systems 17, 2004.

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''Reading:'' Isabelle Guyon, André Elisseeff. [[jmlr.csail.mit.edu/papers/volume3/guyon03a/guyon03a.pdf | An Introduction to variable and feature selection]]. Journal of Machine Learning Research, 3(7-8), 2003.

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''Reading:'' Isabelle Guyon, André Elisseeff. [[http://jmlr.csail.mit.edu/papers/volume3/guyon03a/guyon03a.pdf | An Introduction to variable and feature selection]]. Journal of Machine Learning Research, 3(7-8), 2003.

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!!Week 5:

'''Tuesday, 2/14'''\\
''Lecture:'' SVMs and SVM training algorithms, SVM demo.

'''Thursday, 2/16'''\\
''Lecture:'' Feature selection [ [[Path:../../pdfs/featureSelection.pdf | notes]] ] \\
''Reading:'' Isabelle Guyon, André Elisseeff. [[jmlr.csail.mit.edu/papers/volume3/guyon03a/guyon03a.pdf | An Introduction to variable and feature selection]]. Journal of Machine Learning Research, 3(7-8), 2003.

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!!Week 3:

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!!Week 4:

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!!Week 3:

'''Tuesday, 2/7'''\\
''Lecture:'' Maximum margin classifiers and constrained optimization problems. \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.

'''Thursday, 2/9'''\\
''Lecture:'' Maximum margin classifiers (cont). \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.

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''Lecture:'' Demo of ~~@@PyML@@~~. Maximum margin classifiers. \\

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''Lecture:'' Demo of [[http://pyml.sf.net | PyML]].

'''Tuesday, 2/2'''\\
''Lecture:'' Maximum margin classifiers. \\

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''Lecture:'' Linear classifiers and kernels (continued)~~. A short demo of @@PyML@@~~.

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''Lecture:'' Linear classifiers and kernels (continued).

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!!Week 3:

'''Tuesday, 1/31'''\\
''Lecture:'' Demo of @@PyML@@. Maximum margin classifiers. \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.

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!!Week 2:

'''Tuesday, 1/24'''\\
''Lecture:'' Linear classifiers and kernels [ [[Path:../../pdfs/linear_and_beyond.pdf | notes]] ] \\
''Reading:'' Sections 1.1 and 1.2 in ''Learning with Kernels'' or chapter 2 in ''Kernel methods for pattern analysis''.

'''Thursday, 1/26'''\\
''Lecture:'' Linear classifiers and kernels (continued). A short demo of @@PyML@@.

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!!Week 16:

'''Tuesday, 5/3'''\\
''Lecture:'' Semi-supervised learning.\\
''Reading:'' Jerry Zhu has a two very good tutorials on semi-supervised learning:\\
Xiaojin Zhu. [[http://www.cs.wisc.edu/~jerryzhu/pub/ssl_survey.pdf | Semi-supervised learning literature survey]]. Technical Report 1530, Department of Computer Sciences, University of Wisconsin, Madison, 2005. \\
Xiaojin Zhu and Andrew B. Goldberg.
[[http://www.morganclaypool.com/doi/abs/10.2200/S00196ED1V01Y200906AIM006 | Introduction to Semi-Supervised Learning]]. Morgan & Claypool, 2009.

!!Week 15:

'''Tuesday, 4/26'''\\
''Lecture:'' The 1-norm SVM.\\
''Reading:'' Ji Zhu, Saharon Rosset, Trevor Hastie and Rob Tibshiran. [[http://www.stat.lsa.umich.edu/~jizhu/pubs/Zhu-NIPS04.pdf | 1-norm support vector machines]]. Neural Information Processing Systems (NIPS) 16, 2004.

'''Thursday, 4/28'''\\
''Lecture:'' Machine learning experiment design.\\
''Reading:'' Christophe Ambroise and Geoffrey J. McLachlan.
[[http://www.pnas.org/content/99/10/6562.full | Selection bias in gene extraction on the basis of microarray gene-expression data]].
PNAS 2002 99 (10) 6562-6566.

!!Week 14:

'''Tuesday, 4/19'''\\
''Lecture:'' Hidden Markov models and the Fisher kernel.\\
''Reading:'' T. Jaakkola, M. Diekhans, and D. Haussler.
[[http://people.csail.mit.edu/tommi/papers/discframe.ps | A discriminative framework for detecting remote protein homologies]].
Journal of Computational Biology, 7(1,2):95--114, 2000. \\
'''Thursday, 4/21'''\\
''Lecture:'' Feature selection methods.\\
''Reading:'' Notes on feature selection [ [[Path:../../pdfs/featureSelection.pdf | pdf]] ].

!!Week 13:

'''Tuesday, 4/12'''\\
''Lecture:'' Hidden Markov models for biological sequences\\

!!Week 12:

'''Tuesday, 4/5'''\\
''Lecture:'' The diffusion kernel (kiley) and Training alignment models (Mo).\\
R. Kondor and J. Lafferty.
[[http://www.its.caltech.edu/~risi/papers/diffusion-kernels.pdf|Diffusion Kernels on Graphs and Other Discrete Input Spaces]]. (ICML 2002).\\
Chun-Nam John Yu, T. Joachims, R. Elber, J. Pillardy.
[[ http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0152|Support Vector Training of Protein Alignment Models]]. Journal of Computational Biology, 15(7): 867-880, 2008.

'''Thursday, 4/7'''\\
''Lecture:'' Fayyaz and Mo wrap up their talks.

!!Week 11:

'''Tuesday, 3/29'''\\
''Lecture:'' Local alignment kernel.\\
''Reading:'': J.-P. Vert, H. Saigo, T. Akutsu, [[http://cbio.ensmp.fr/~jvert/publi/04kmcbbook/saigo.pdf | Local alignment kernels for biological sequences]], in Kernel Methods in Computational Biology, B. Schölkopf, K. Tsuda and J.-P. Vert (Eds.), MIT Press, p.131-154, 2004.

'''Thursday, 3/31'''\\
''Lecture:'' Protein complex prediction (Jake) and Protein metal ion binding (Fayyaz).\\
''Reading:'': P. Frasconi and A. Passerini (2009).
[[http://www.dsi.unifi.it/~paolo/ps/NIPS08.pdf | Predicting the Geometry of Metal Binding Sites from Protein Sequence]].
Proceedings of the Twenty-Second Annual Conference on Neural Information Processing Systems (NIPS'08) (pp. 465-472)\\
Jian Qiu and William Stafford Noble.
[[http://noble.gs.washington.edu/papers/qiu2008predicting.html | Predicting co-complexed protein pairs from heterogeneous data]].
PLoS Computational Biology. 4(4):e1000054, 2008.

!!Week 10:

'''Tuesday, 3/22'''\\
''Lecture:'' Prediction of Calmodulin interactions and binding sites.\\

'''Thursday, 3/24'''\\
''Lecture:'' Sequence alignment\\
''Reading:'' [[http://bix.ucsd.edu/bioalgorithms/book/excerpt-ch6.pdf | Chapter 6]] of ''Introduction to bioinformatics algorithms''\\

!!Week 9:

Spring break!

!!Week 8:

'''Tuesday, 3/1'''\\
''Lecture:'' Prediction of protein-protein interactions (cont). Structured SVMs for prediction of protein function.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.\\

!!Week 7:

'''Tuesday, 3/1'''\\
''Lecture:'' Prediction of protein protein interactions with kernel methods.\\
''Reading:''
A. Ben-Hur and W.S. Noble. [[http://www.cs.colostate.edu/~asa/pdfs/sppii.pdf | Kernel methods for predicting protein-protein interactions]]. In: Proceedings, thirteenth international conference on intelligent systems for molecular biology. Bioinformatics 21(Suppl. 1): i38-i46, 2005.

'''Thursday, 3/3'''\\
''Lecture'': Prediction of protein-protein interactions (cont).

!!Week 6:

'''Tuesday, 2/22'''\\
''Lecture:'' SVMs for unbalanced data. Practical issues in SVM training\\
''Reading:'' A. Ben-Hur, C-S. Ong, S. Sonnenburg, B. Schoelkopf, and G. Raetsch. [[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000173 | Support vector machines and kernels for computational biology]]. PLoS Computational Biology 4(10): e1000173, 2008.\\
A. Ben-Hur and J. Weston. [[http://www.cs.colostate.edu/~asa/pdfs/howto.pdf | A User’s guide to Support Vector Machines]]. In Biological Data Mining. Oliviero Carugo and Frank Eisenhaber (eds.) Springer Protocols, 2009.

'''Thursday, 2/24'''\\
''Lecture:'' Tricks for constructing kernels. Introduction to microarray data.\\
''Reading:'' A.L. Tarca, R. Romero, and S. Draghici.
[[http://vortex.cs.wayne.edu/papers/Analysis.of.microarray.experiments.tarca.pdf | Analysis of microarray experiments of gene expression profiling]]. See also this [[http://www.ncbi.nlm.nih.gov/About/primer/microarrays.html|primer]] from NCBI.\\

!!Week 5:

'''Tuesday, 2/15'''\\
''Lecture:'' Discussion of class projects.\\
'''Thursday, 2/17'''\\
''Lecture:'' Class projects - continued. Introduction to structured SVMs and possible structured SVM projects.\\
''Reading:'' I. Tsochantaridis, T. Joachims, T. Hofmann, and Y. Altun.
[[http://jmlr.csail.mit.edu/papers/volume6/tsochantaridis05a/tsochantaridis05a.pdf | Large Margin Methods for Structured and Interdependent Output Variables]],
Journal of Machine Learning Research (JMLR), 6(Sep):1453-1484, 2005.\\

!!Week 4:

'''Tuesday, 2/8'''\\
''Lecture:'' Optimization with constraints.\\
''Reading:'' The book [[http://www.stanford.edu/~boyd/cvxbook/|convex optimization]] is an excellent free resource. I will cover some material from chapter 5.\\
'''Thursday, 2/10'''\\
''Lecture:'' Formulating and optimizing maximum margin classifiers. \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.\\

!!Week 3:

'''Tuesday, 2/1'''\\
''Lecture:'' Linear classifier and kernels (continued).\\
'''Thursday, 2/3'''\\
''Lecture:'' Maximum margin classifiers. \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.\\

!!Week 2:

'''Tuesday, 1/25'''\\
''Lecture:'' Linear classifiers and kernels [ [[Path:../../pdfs/linear_and_beyond.pdf | notes]] ] \\
''Reading:'' Sections 1.1 and 1.2 in ''Learning with Kernels''; chapter 2 in ''Kernel methods for pattern analysis''.

'''Thursday, 1/27'''\\
''Lecture:'' Linear classifiers and kernels (continued). A short demo of @@PyML@@.

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'''Tuesday, 1/18'''\\

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'''Tuesday, 1/17'''\\

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'''Thursday, 1/20'''\\

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'''Thursday, 1/19'''\\

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!!Week 16:

'''Tuesday, 5/3'''\\
''Lecture:'' Semi-supervised learning.\\
''Reading:'' Jerry Zhu has a two very good tutorials on semi-supervised learning:\\
Xiaojin Zhu. [[http://www.cs.wisc.edu/~jerryzhu/pub/ssl_survey.pdf | Semi-supervised learning literature survey]]. Technical Report 1530, Department of Computer Sciences, University of Wisconsin, Madison, 2005. \\
Xiaojin Zhu and Andrew B. Goldberg.
[[http://www.morganclaypool.com/doi/abs/10.2200/S00196ED1V01Y200906AIM006 | Introduction to Semi-Supervised Learning]]. Morgan & Claypool, 2009.

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'''Thursday, 4/28'''\\
''Lecture:'' Machine learning experiment design.\\
''Reading:'' Christophe Ambroise and Geoffrey J. McLachlan.
[[http://www.pnas.org/content/99/10/6562.full | Selection bias in gene extraction on the basis of microarray gene-expression data]].
PNAS 2002 99 (10) 6562-6566.

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!!Week 14:

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!!Week 15:

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!!Week 14:

'''Tuesday, 4/26'''\\
''Lecture:'' The 1-norm SVM.\\
''Reading:'' Ji Zhu, Saharon Rosset, Trevor Hastie and Rob Tibshiran. [[http://www.stat.lsa.umich.edu/~jizhu/pubs/Zhu-NIPS04.pdf | 1-norm support vector machines]]. Neural Information Processing Systems (NIPS) 16, 2004.

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Journal of Computational Biology, 7(1,2):95--114, 2000.

'''~~Tuesday~~, 4/21'''\\

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Journal of Computational Biology, 7(1,2):95--114, 2000. \\
'''Thursday, 4/21'''\\

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''Lecture:'' Feature selection methods.

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''Lecture:'' Feature selection methods.\\

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''Reading:'' Notes on feature selection [ [[Path:~~../~~../../pdfs/featureSelection.pdf | pdf]] ].

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''Reading:'' Notes on feature selection [ [[Path:../../pdfs/featureSelection.pdf | pdf]] ].

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'''Tuesday, 4/21'''\\
''Lecture:'' Feature selection methods.
''Reading:'' Notes on feature selection [ [[Path:../../../pdfs/featureSelection.pdf | pdf]] ].

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!!Week 14:

'''Tuesday, 4/19'''\\
''Lecture:'' Hidden Markov models and the Fisher kernel.\\
''Reading:'' T. Jaakkola, M. Diekhans, and D. Haussler.
[[http://people.csail.mit.edu/tommi/papers/discframe.ps | A discriminative framework for detecting remote protein homologies]].
Journal of Computational Biology, 7(1,2):95--114, 2000.

Changed lines 12-15 from:

''Lecture:'' Hidden Markov models for biological sequences ~~and the Fisher kernel.~~\\
''Reading:'' T. Jaakkola, M. Diekhans, and D. Haussler.
[[http://people.csail.mit.edu/tommi/papers/discframe.ps | A discriminative framework for detecting remote protein homologies]].
Journal of Computational Biology, 7(1,2):95--114, 2000.

to:

''Lecture:'' Hidden Markov models for biological sequences\\

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'''Thursday, 4/7'''\\
''Lecture:'' Fayyaz and Mo wrap up their talks.

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!!Week 13:

'''Tuesday, 4/12'''\\
''Lecture:'' Hidden Markov models for biological sequences and the Fisher kernel.\\
''Reading:'' T. Jaakkola, M. Diekhans, and D. Haussler.
[[http://people.csail.mit.edu/tommi/papers/discframe.ps | A discriminative framework for detecting remote protein homologies]].
Journal of Computational Biology, 7(1,2):95--114, 2000.

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''Lecture:'' The diffusion kernel.\\

to:

''Lecture:'' The diffusion kernel (kiley) and Training alignment models (Mo).\\

April 06, 2011, at 02:53 PM MST by 129.82.44.191 -

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[[ http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0152|Support Vector Training of Protein Alignment Models ]].
Journal of Computational Biology, 15(7): 867-880, 2008.

to:

[[ http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0152|Support Vector Training of Protein Alignment Models]]. Journal of Computational Biology, 15(7): 867-880, 2008.

April 06, 2011, at 02:52 PM MST by 129.82.44.191 -

Changed lines 6-7 from:

[[http://www.its.caltech.edu/~risi/papers/diffusion-kernels.pdf
| Diffusion Kernels on Graphs and Other Discrete Input Spaces]]. (ICML 2002)\\

to:

[[http://www.its.caltech.edu/~risi/papers/diffusion-kernels.pdf|Diffusion Kernels on Graphs and Other Discrete Input Spaces]]. (ICML 2002).\\

Changed lines 8-9 from:

[[http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0152
| Support Vector Training of Protein Alignment Models]].

to:

[[ http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0152|Support Vector Training of Protein Alignment Models ]].

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!!Week 12:

'''Tuesday, 4/5'''\\
''Lecture:'' The diffusion kernel.\\
R. Kondor and J. Lafferty.
[[http://www.its.caltech.edu/~risi/papers/diffusion-kernels.pdf
| Diffusion Kernels on Graphs and Other Discrete Input Spaces]]. (ICML 2002)\\
Chun-Nam John Yu, T. Joachims, R. Elber, J. Pillardy.
[[http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0152
| Support Vector Training of Protein Alignment Models]].
Journal of Computational Biology, 15(7): 867-880, 2008.

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J.-P. Vert, H. Saigo, T. Akutsu, [[http://cbio.ensmp.fr/~jvert/publi/04kmcbbook/saigo.pdf | Local alignment kernels for biological sequences]], in Kernel Methods in Computational Biology, B. Schölkopf, K. Tsuda and J.-P. Vert (Eds.), MIT Press, p.131-154, 2004.

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'''Thursday, 3/31'''\\
''Lecture:'' Protein complex prediction (Jake) and Protein metal ion binding (Fayyaz).\\
''Reading:'': P. Frasconi and A. Passerini (2009).
[[http://www.dsi.unifi.it/~paolo/ps/NIPS08.pdf | Predicting the Geometry of Metal Binding Sites from Protein Sequence]].
Proceedings of the Twenty-Second Annual Conference on Neural Information Processing Systems (NIPS'08) (pp. 465-472)\\
Jian Qiu and William Stafford Noble.
[[http://noble.gs.washington.edu/papers/qiu2008predicting.html | Predicting co-complexed protein pairs from heterogeneous data]].
PLoS Computational Biology. 4(4):e1000054, 2008.

J.-P. Vert, H. Saigo, T. Akutsu, [[http://cbio.ensmp.fr/~jvert/publi/04kmcbbook/saigo.pdf | Local alignment kernels for biological sequences]], in Kernel Methods in Computational Biology, B. Schölkopf, K. Tsuda and J.-P. Vert (Eds.), MIT Press, p.131-154, 2004.

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!!Week 10:

to:

!!Week 11:

March 29, 2011, at 08:24 AM MST by 71.196.160.54 -

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''Lecture:'' Local alignment kernel.

to:

''Lecture:'' Local alignment kernel.\\

March 29, 2011, at 08:24 AM MST by 71.196.160.54 -

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'''Tuesday, 3/29'''\\
''Lecture:'' Local alignment kernel.
''Reading:'': J.-P. Vert, H. Saigo, T. Akutsu, [[http://cbio.ensmp.fr/~jvert/publi/04kmcbbook/saigo.pdf | Local alignment kernels for biological sequences]], in Kernel Methods in Computational Biology, B. Schölkopf, K. Tsuda and J.-P. Vert (Eds.), MIT Press, p.131-154, 2004.

!!Week 10:

Changed line 14 from:

''Lecture:'' Sequence ~~alignment~~

to:

''Lecture:'' Sequence alignment\\

March 24, 2011, at 11:21 AM MST by 129.82.44.191 -

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!!Week 8:

to:

!!Week 9:

March 24, 2011, at 11:16 AM MST by 129.82.44.191 -

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''Reading:'' [[http://bix.ucsd.edu/bioalgorithms/book/excerpt-ch6.pdf | Chapter 6] of ''Introduction to bioinformatics algorithms''\\

to:

''Reading:'' [[http://bix.ucsd.edu/bioalgorithms/book/excerpt-ch6.pdf | Chapter 6]] of ''Introduction to bioinformatics algorithms''\\

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''Reading:'' ~~Chapter 6 of ''Introduction to bioinformatics algorithms''~~ [[http://bix.ucsd.edu/bioalgorithms/book/excerpt-ch6.pdf | ~~pdf~~]] \\

to:

''Reading:'' [[http://bix.ucsd.edu/bioalgorithms/book/excerpt-ch6.pdf | Chapter 6] of ''Introduction to bioinformatics algorithms''\\

March 24, 2011, at 11:15 AM MST by 129.82.44.191 -

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!!Week 10:

'''Tuesday, 3/22'''\\
''Lecture:'' Prediction of Calmodulin interactions and binding sites.\\

'''Thursday, 3/24'''\\
''Lecture:'' Sequence alignment
''Reading:'' Chapter 6 of ''Introduction to bioinformatics algorithms'' [[http://bix.ucsd.edu/bioalgorithms/book/excerpt-ch6.pdf | pdf]] \\

!!Week 8:

Spring break!

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!!Week 7:

to:

!!Week 8:

Added lines 5-11:

''Lecture:'' Prediction of protein-protein interactions (cont). Structured SVMs for prediction of protein function.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.\\

!!Week 7:

'''Tuesday, 3/1'''\\

Changed lines 17-18 from:

''Lecture'': Prediction of protein-protein interactions (cont). Structured SVMs for prediction of protein function.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.\\

to:

''Lecture'': Prediction of protein-protein interactions (cont).

March 01, 2011, at 02:01 PM MST by 129.82.44.191 -

Changed lines 4-5 from:

''Lecture:'' ~~Structured SVMs for prediction of protein function. Prediction of protein protein interactions with kernel~~ methods.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.\\

to:

''Lecture:'' Prediction of protein protein interactions with kernel methods.\\
''Reading:''

Changed lines 9-11 from:

''Lecture'': Prediction of protein-protein interactions (cont).

to:

''Lecture'': Prediction of protein-protein interactions (cont). Structured SVMs for prediction of protein function.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.\\

March 01, 2011, at 10:47 AM MST by 129.82.44.191 -

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!!Week 6:

to:

!!Week 7:

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'''Thursday, 3/3'''\\
''Lecture'': Prediction of protein-protein interactions (cont).

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!!Week 6:

'''Tuesday, 3/1'''\\
''Lecture:'' Structured SVMs for prediction of protein function. Prediction of protein protein interactions with kernel methods.\\
''Reading:'' A. Sokolov and A. Ben-Hur. [[http://www.cs.colostate.edu/~asa/pdfs/gostructJBCB.pdf | Hierarchical classification of Gene Ontology terms using the GOstruct method]]. Journal of Bioinformatics and Computational Biology 8(2): 357-376, 2010.\\
A. Ben-Hur and W.S. Noble. [[http://www.cs.colostate.edu/~asa/pdfs/sppii.pdf | Kernel methods for predicting protein-protein interactions]]. In: Proceedings, thirteenth international conference on intelligent systems for molecular biology. Bioinformatics 21(Suppl. 1): i38-i46, 2005.

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Changed line 9 from:

''Lecture:'' Introduction to microarray data.\\

to:

''Lecture:'' Tricks for constructing kernels. Introduction to microarray data.\\

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!!Week 6:

'''Tuesday, 2/22'''\\
''Lecture:'' SVMs for unbalanced data. Practical issues in SVM training\\
''Reading:'' A. Ben-Hur, C-S. Ong, S. Sonnenburg, B. Schoelkopf, and G. Raetsch. [[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000173 | Support vector machines and kernels for computational biology]]. PLoS Computational Biology 4(10): e1000173, 2008.\\
A. Ben-Hur and J. Weston. [[http://www.cs.colostate.edu/~asa/pdfs/howto.pdf | A User’s guide to Support Vector Machines]]. In Biological Data Mining. Oliviero Carugo and Frank Eisenhaber (eds.) Springer Protocols, 2009.

'''Thursday, 2/24'''\\
''Lecture:'' Introduction to microarray data.\\
''Reading:'' A.L. Tarca, R. Romero, and S. Draghici.
[[http://vortex.cs.wayne.edu/papers/Analysis.of.microarray.experiments.tarca.pdf | Analysis of microarray experiments of gene expression profiling]]. See also this [[http://www.ncbi.nlm.nih.gov/About/primer/microarrays.html|primer]] from NCBI.\\

February 18, 2011, at 09:36 AM MST by 129.82.44.191 -

Changed lines 7-9 from:

''Reading:'' ~~Chapter 7 in ''Learning with Kernels''~~.\\

to:

''Reading:'' I. Tsochantaridis, T. Joachims, T. Hofmann, and Y. Altun.
[[http://jmlr.csail.mit.edu/papers/volume6/tsochantaridis05a/tsochantaridis05a.pdf | Large Margin Methods for Structured and Interdependent Output Variables]],
Journal of Machine Learning Research (JMLR), 6(Sep):1453-1484, 2005.\\

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''Tuesday, 2/15'''\\

to:

'''Tuesday, 2/15'''\\

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!!Week 5:

''Tuesday, 2/15'''\\
''Lecture:'' Discussion of class projects.\\
'''Thursday, 2/17'''\\
''Lecture:'' Class projects - continued. Introduction to structured SVMs and possible structured SVM projects.\\
''Reading:'' Chapter 7 in ''Learning with Kernels''.\\

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!!Week 4:

'''Tuesday, 2/8'''\\
''Lecture:'' Optimization with constraints.\\
''Reading:'' The book [[http://www.stanford.edu/~boyd/cvxbook/|convex optimization]] is an excellent free resource. I will cover some material from chapter 5.\\
'''Thursday, 2/10'''\\
''Lecture:'' Formulating and optimizing maximum margin classifiers. \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.\\

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''Lecture:'' Linear classifier and kernels (continued).

to:

''Lecture:'' Linear classifier and kernels (continued).\\
'''Thursday, 2/3'''\\
''Lecture:'' Maximum margin classifiers. \\
''Reading:'' Chapter 7 in ''Learning with Kernels''.\\

January 31, 2011, at 11:47 AM MST by 129.82.44.191 -

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!!Week 3:

'''Tuesday, 2/1'''\\
''Lecture:'' Linear classifier and kernels (continued).

January 31, 2011, at 11:40 AM MST by 129.82.44.191 -

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'''Thursday, 1/27'''\\
''Lecture:'' Linear classifiers and kernels (continued). A short demo of @@PyML@@.

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!!Week 2:

'''Tuesday, 1/25'''\\
''Lecture:'' Linear classifiers and kernels [ [[Path:../../pdfs/linear_and_beyond.pdf | notes]] ] \\
''Reading:'' Sections 1.1 and 1.2 in ''Learning with Kernels''; chapter 2 in ''Kernel methods for pattern analysis''.

January 20, 2011, at 11:59 AM MST by 129.82.44.196 -

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'''Thursday, 1/20'''\\
''Lecture:'' Course introduction - continued.

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''Reading:'' Alex Zien's ''A primer on molecular biology'' [ [[http://www.kyb.mpg.de/publications/pdfs/pdf2503.pdf | pdf]] ]. Martin Tompa's notes [ [[http://www.cs.washington.edu/homes/tompa/papers/molbio.pdf |pdf]] ]. \\

to:

''Reading:'' Alex Zien's ''A primer on molecular biology'' [ [[http://www.kyb.mpg.de/publications/pdfs/pdf2503.pdf | pdf]] ].\\ Martin Tompa's notes [ [[http://www.cs.washington.edu/homes/tompa/papers/molbio.pdf |pdf]] ]. \\

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Changed lines 4-5 from:

''Lecture:'' Course introduction [ [[Path:../../pdfs/01_intro.pdf | slides]] ] \\
''Reading:'' . \\

to:

''Lecture:'' Course introduction - some biology basics, the role of machine learning in bioinformatics [ [[Path:../../pdfs/01_intro.pdf | slides]] ] \\
''Reading:'' Alex Zien's ''A primer on molecular biology'' [ [[http://www.kyb.mpg.de/publications/pdfs/pdf2503.pdf | pdf]] ]. Martin Tompa's notes [ [[http://www.cs.washington.edu/homes/tompa/papers/molbio.pdf |pdf]] ]. \\

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Changed line 5 from:

''Reading:'' ~~Chapter 1 in Kleinberg and Tardos~~. \\

to:

''Reading:'' . \\

December 23, 2010, at 11:27 AM MST by 67.190.27.250 -

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Changed lines 3-10 from:

'''~~Wednesday~~, 1/20'''\\
''Lecture:'' Course introduction; [[~~http~~:~~//www~~.~~sciencemag~~.~~org~~/~~cgi~~/~~content~~/~~short/325/5940/541~~ | ~~why programming?~~]] ~~[ [[Path~~:.~~./../pdfs/01_intro.pdf | slides]] ]~~ \\
''Reading:'' Chapter 1 in [[http://openbookproject.net/thinkcs/python/english2e/ch01.html | How to think like a computer scientist]]. \\

'''Friday, 1/22'''\\
''Lecture:'' Our [[first program]], [[programming errors]], Python [[types]], [[variables]]\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch02.html | 2]].\\

to:

'''Tuesday, 1/18'''\\
''Lecture:'' Course introduction [ [[Path:../../pdfs/01_intro.pdf | slides]] ] \\
''Reading:'' Chapter 1 in Kleinberg and Tardos. \\

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Changed lines 1-212 from:

!!Week 15:

'''Monday, 4/26'''

''Lecture:'' Plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]]. \\
''Reading:'' The matplotlib [[http://matplotlib.sourceforge.net/users/pyplot_tutorial.html|tutorial]].\\
''Lab:'' [[lab14 | lab 14]]

'''Wednesday, 4/28'''

''Lecture:'' Plotting: Generating [[subplots]], [[histograms]], [[legends]].

'''Friday, 4/30'''

''Lecture:'' Review for exam.

!!Week 14:

'''Monday, 4/26'''

''Lecture:'' Using biopython for DNA sequence motifs [[biopython-motif|motifs]]. Example data: the [[Path:../../data/MA0024.1.pfm|E2F1 motif]] and [[Path:../../data/human_promoter500.fasta|human promoter sequences]].\\
''Lab:'' [[lab13 | lab 13]]

'''Wednesday, 4/28'''

''Lecture:'' More about motif finding.

'''Friday, 4/30'''

''Lecture:'' Finish motif finding with biopython.

!!Week 13:

'''Monday, 4/19'''\\
''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions.\\
''Lab:'' [[lab12 | lab 12]]

'''Wednesday, 4/21'''\\
''Lecture:'' We will start playing with biopython [[biopython-seq|sequence objects]].\\
''Reading:'' Chapter 3 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc16 | tutorial]].

'''Friday, 4/23'''\\
''Lecture:'' We will use biopython to [[biopython-parse|parse]] sequence files.\\
Here's the data for these examples: Calmodulin sequences in [[Path:../../data/cam.fasta | fasta]], [[Path:../../data/cam.txt|uniprot]], and [[Path:../../data/cam.gbk|genbank]] formats. \\
''Reading:'' Chapter 2 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc10 | tutorial]].

!!Week 12:

'''Monday, 4/12'''\\
''Lecture:'' Inheritance in python [[inheritance| the shapes example]].\\
''Lab:'' [[lab11 | lab 11]]\\
''Assignment:'' [[Assignment11 | Assignment 11]]

'''Wednesday, 4/14'''\\
''Lecture:'' [[interfaces]] in Python. New style classes [[new classes | example]]. See also the
python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]].

'''Friday, 4/16'''\\
''Lecture:'' Methods for solving [[Assignment9 | assignment 9]].

!!Week 11:

'''Monday, 4/5'''\\
''Lecture:'' Python classes - representing [[shapes|shapes]]; digression: [[random numbers]]\\
''Lab:'' [[lab10 | lab 10]]\\
''Assignment:'' [[Assignment10 |Assignment 10]]

'''Wednesday, 4/7'''\\
''Lecture:'' Operator overloading [[overloading|example]]; the [[cards | cards]] example.\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch15.html#operator-overloading|15]].

'''Friday, 4/9'''\\
''Lecture:'' Python classes (cont)

!!Week 10:

'''Monday, 3/29'''\\
''Lecture:'' Using Python object - continued.\\
''Lab:'' [[lab9 | lab 9]]\\
''Assignments:'' [[Assignment9 |Assignment 9]]

'''Wednesday, 3/31'''\\
''Lecture:'' Introduction to Python classes. code [[classes introduction|examples]].\\
''Reading:'' [[http://openbookproject.net/thinkcs/python/english2e/ch13.html|chapter 13]] and [[http://openbookproject.net/thinkcs/python/english2e/ch15.html|chapter 15]]

'''Friday, 4/2'''\\
''Lecture:'' No lecture today due to [[http://futurevisions.colostate.edu| future visions]].

!!Week 9:

'''Monday, 3/22'''\\
''Lecture:'' dictionaries. code [[dictionaries|examples]].\\
''Lab:'' [[lab8 | lab 8]]\\
''Assignments:'' [[Assignment8 |Assignment 8]]\\
''Reading:'' [[http://openbookproject.net/thinkcs/python/english2e/ch12.html|chapter 12]]

'''Wednesday, 3/24'''\\
''Lecture:'' tuples ([[tuples|examples]]); functions revisited: variable length argument lists using [[tuple_var_args|tuples]] and [[dictionary_var_args|dictionaries]].

'''Friday, 3/26'''\\
''Lecture:'' Using python objects - object methods of [[using objects|strings, lists, and dictionaries]].

!!Week 8:

'''Monday, 3/8'''\\
''Lecture:'' recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. code [[recursion|examples]].\\
''Lab:'' [[lab7 | lab 7]]\\
''Assignments:'' [[Assignment7 |Assignment 7]]\\
''Reading:'' [[http://openbookproject.net/thinkcs/python/english2e/ch11.html#recursion|chapter 11]]

'''Wednesday, 3/10'''\\
''Lecture:'' recursion - continued. More examples: [[factorial]], [[recursive binary search]].

'''Friday, 3/12'''\\
''Lecture:'' midterm

!!Week 7:

'''Monday, 3/1'''\\
''Lecture:'' binary search [[binary search | code]]; measuring the efficiency of algorithms [ [[Path:../../pdfs/04_complexity.pdf | slides]] ]\\
''Lab:'' [[lab6 | lab 6]]\\
''Assignments:'' [[Assignment6 |Assignment 6]]

'''Wednesday, 3/3'''\\
''Lecture:'' algorithm efficiency (cont).

'''Friday, 3/5'''\\
''Lecture:'' Exceptions [[exceptions | code]]; command line arguments [[argv_example| example]].\\
''Reading:'' Exceptions section in [[http://openbookproject.net/thinkcs/python/english2e/ch11.html#exceptions | chapter 11]].

!!Week 6:

'''Monday, 2/22'''\\
''Lecture:'' Strings and lists ([[strings and lists | code]]), iterators ([[iterators | code]]), files ([[files | code]]).\\
''Lab:'' [[lab5 | lab 5]]\\
''Assignments:'' [[Assignment5 |Assignment 5]]

'''Wednesday, 2/24'''\\
''Lecture:'' Sorting algorithms [ [[Path:../../pdfs/03_sorting.pdf | slides]] ]; here's the [[sorting|code]].

'''Friday, 2/26'''\\
''Lecture:'' Sorting algorithms, continued;

!!Week 5:

'''Monday, 2/15'''\\
''Lecture:'' Strings (continued), string formatting ([[string formatting | examples]]).\\
''Lab:'' [[lab4 | lab 4]]\\
''Assignments:'' [[Assignment4 |Assignment 4]]

'''Wednesday, 2/17'''\\

''Lecture:'' Lists ([[lists]])\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].

'''Friday, 2/19'''\\
''Lecture:'' Lists are mutable ([[list mutability | code]]), lists as function parameters ([[lists as parameters | code]]), nested lists ([[nested lists | code]]).\\

!!Week 4:

'''Monday, 2/8'''\\
''Lecture:'' While loops (cont): printing [[tables]]. Iteration using [[for loops]].\\
''Lab:'' [[lab3 | Lab 3]]\\
''Assignments:'' [[Assignment3 |Assignment 3]]

'''Wednesday, 2/10'''\\
''Lecture:'' For loops (cont): [[nestedLoops | nested loops]]. Strings ([[string_examples| examples]]).\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch07.html | 7]].

'''Friday, 2/12'''\\
''Lecture:'' Strings (continued).\\

!!Week 3:

'''Monday, 2/1'''\\
''Lecture:'' Conditionals - the if statement [[boolean variables]], [[conditionals]], [[sort names]], [[letter grade]] calculator, a better version of [[letter grade2 | letter grade]].\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch04.html | 4]].\\
''Lab:'' [[lab2 | Lab 2]]\\
''Assignments:'' [[Assignment2 |Assignment 2]]

'''Wednesday, 2/3'''\\
''Lecture:'' Functions that return a value. Examples: [[area]], [[divisibility]], [[absolute value]].\\
Iteration - the while statement. Here's an [[while example|example]].\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch05.html | 5]],
chapter [[http://openbookproject.net/thinkcs/python/english2e/ch06.html | 6]] \\

'''Friday, 2/5'''\\
''Lecture:'' While loops: [[inputValidation | input validation]].\\

!!Week 2:

'''Monday, 1/25'''\\
''Lecture:'' Python [[expressions]], and [[input]]. Putting it together: [[celsius2fahreheit | Celsius to fahreheit converter]] \\
''Lab:'' [[lab1]]\\
''Assignments:'' [[Assignment1]]

'''Wednesday, 1/27'''\\
''Lecture:'' Functions [ [[Path:../../pdfs/02_functions.pdf | slides]] ]. [[draw_rectangle]], [[celsius2fahrenheit]], [[functions]].
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch03.html | 3]].\\

'''Friday, 1/29'''\\
''Lecture:'' Functions - continued [[local variables]], conditionals - the if statement [[boolean variables]].\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch04.html | 4]].\\

to:

Deleted lines 11-12:

!

May 04, 2010, at 02:48 PM MST by 10.84.44.105 -

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''Lecture:'' Plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]]. ~~Generating [[subplots]].~~\\

to:

''Lecture:'' Plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]]. \\

Added lines 8-15:

'''Wednesday, 4/28'''

''Lecture:'' Plotting: Generating [[subplots]], [[histograms]], [[legends]].

'''Friday, 4/30'''

''Lecture:'' Review for exam.

May 03, 2010, at 12:43 PM MST by 10.84.44.68 -

May 03, 2010, at 10:09 AM MST by 10.84.44.68 -

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''Reading:'' The matplotlib [[http://matplotlib.sourceforge.net/users/pyplot_tutorial.html|tutorial]].

to:

''Reading:'' The matplotlib [[http://matplotlib.sourceforge.net/users/pyplot_tutorial.html|tutorial]].\\

May 03, 2010, at 10:09 AM MST by 10.84.44.68 -

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''Lab:'' [[lab14 | lab 14]]

May 03, 2010, at 08:39 AM MST by 10.84.44.68 -

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''Lecture:'' Plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]]. Generating [[subplots]].

to:

''Lecture:'' Plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]]. Generating [[subplots]].\\
''Reading:'' The matplotlib [[http://matplotlib.sourceforge.net/users/pyplot_tutorial.html|tutorial]].

May 03, 2010, at 07:37 AM MST by 71.196.160.210 -

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!!Week 14:

to:

!!Week 15:

Added lines 5-10:

''Lecture:'' Plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]]. Generating [[subplots]].

!!Week 14:

'''Monday, 4/26'''

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''Lecture:'' Finish motif finding with biopython. ~~Start plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]].~~

to:

''Lecture:'' Finish motif finding with biopython.

April 29, 2010, at 09:21 PM MST by 71.196.160.210 -

Added lines 7-14:

'''Wednesday, 4/28'''

''Lecture:'' More about motif finding.

'''Friday, 4/30'''

''Lecture:'' Finish motif finding with biopython. Start plotting with [[http://matplotlib.sf.net|matplotlib]]. Here's code for a simple [[sine curve|plot]].

April 26, 2010, at 11:50 AM MST by 10.84.44.74 -

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to:

''Lab:'' [[lab13 | lab 13]]

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''Lab:'' [[[[lab12 | lab 12]]

to:

''Lab:'' [[lab12 | lab 12]]

April 25, 2010, at 10:35 PM MST by 75.70.85.194 -

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!!Week 13:

to:

!!Week 14:

April 25, 2010, at 10:35 PM MST by 75.70.85.194 -

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'''Monday, 4/26'''

''Lecture:'' Using biopython for DNA sequence motifs [[biopython-motif|motifs]]. Example data: the [[Path:../../data/MA0024.1.pfm|E2F1 motif]] and [[Path:../../data/human_promoter500.fasta|human promoter sequences]].\\

!!Week 13:

Changed lines 18-19 from:

''Lecture:'' We will use biopython to [[biopython-parse|parse]] sequence files~~, and to hanld~~ [[~~biopython-motif|motifs]]~~.\\
Here's the data ~~for these examples~~: ~~Calmodulin sequences in [[Path:~~../../data/cam.~~fasta~~ | ~~fasta~~]], [[Path:../../data/cam.~~txt~~|~~uniprot~~]]~~, and [[Path:../../data/cam.gbk|genbank]] formats. The [[Path:../../data/MA0024.1.pfm|E2F1 motif]] and [[Path:../../data/human_promoter500.fasta|human promoter sequences]].~~\\

to:

''Lecture:'' We will use biopython to [[biopython-parse|parse]] sequence files.\\
Here's the data for these examples: Calmodulin sequences in [[Path:../../data/cam.fasta | fasta]], [[Path:../../data/cam.txt|uniprot]], and [[Path:../../data/cam.gbk|genbank]] formats. \\

April 22, 2010, at 12:43 PM MST by 10.84.44.65 -

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Here's the data for these examples: Calmodulin sequences in [[Path:../../data/cam.fasta | fasta]], [[Path:../../data/cam.txt|uniprot]], and [[Path:../../data/cam.gbk|genbank]] formats. The [[Path:../../data/MA0024.1.pfm|E2F1 motif]] and [[Path:../../data/human_promoter500.fasta|human promoter sequences]].

to:

Here's the data for these examples: Calmodulin sequences in [[Path:../../data/cam.fasta | fasta]], [[Path:../../data/cam.txt|uniprot]], and [[Path:../../data/cam.gbk|genbank]] formats. The [[Path:../../data/MA0024.1.pfm|E2F1 motif]] and [[Path:../../data/human_promoter500.fasta|human promoter sequences]].\\

April 22, 2010, at 12:42 PM MST by 10.84.44.65 -

Added line 13:

Here's the data for these examples: Calmodulin sequences in [[Path:../../data/cam.fasta | fasta]], [[Path:../../data/cam.txt|uniprot]], and [[Path:../../data/cam.gbk|genbank]] formats. The [[Path:../../data/MA0024.1.pfm|E2F1 motif]] and [[Path:../../data/human_promoter500.fasta|human promoter sequences]].

April 22, 2010, at 12:24 PM MST by 10.84.44.65 -

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'''Friday, 4/23'''\\
''Lecture:'' We will use biopython to [[biopython-parse|parse]] sequence files, and to hanld [[biopython-motif|motifs]].\\
''Reading:'' Chapter 2 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc10 | tutorial]].

April 21, 2010, at 10:14 AM MST by 10.84.44.73 -

Deleted line 4:

~~''Reading:'' Chapter 3 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc16 | tutorial]].\\~~

Added line 9:

''Reading:'' Chapter 3 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc16 | tutorial]].

April 21, 2010, at 10:13 AM MST by 10.84.44.73 -

Changed line 4 from:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions~~. We will start playing with biopython [[biopython-seq|sequence objects]]~~.\\

to:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions.\\

Added lines 7-9:

'''Wednesday, 4/21'''\\
''Lecture:'' We will start playing with biopython [[biopython-seq|sequence objects]].\\

April 19, 2010, at 10:04 AM MST by 10.84.44.72 -

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!!Week 13:

'''Monday, 4/19'''\\
''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].\\
''Reading:'' Chapter 3 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc16 | tutorial]].\\
''Lab:'' [[[[lab12 | lab 12]]

Deleted lines 20-23:

'''Monday, 4/19'''\\
''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].\\
''Reading:'' Chapter 3 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc16 | tutorial]].

April 16, 2010, at 01:11 PM MST by 10.84.44.149 -

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''Lecture:'' Methods for solving [[Assignment9 | assignment 9]].

'''Monday, 4/19'''\\

April 15, 2010, at 09:13 PM MST by 75.70.85.194 -

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''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].//

to:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].\\

April 15, 2010, at 09:13 PM MST by 75.70.85.194 -

Changed lines 13-14 from:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].

to:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].//
''Reading:'' Chapter 3 in the biopython [[http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc16 | tutorial]].

April 15, 2010, at 09:08 PM MST by 75.70.85.194 -

Changed line 13 from:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions.

to:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions. We will start playing with biopython [[biopython-seq|sequence objects]].

April 14, 2010, at 02:58 PM MST by 10.84.44.72 -

Changed line 13 from:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]].

to:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]]. Also see the biopython [[http://biopython.org/wiki/Download|install]] instructions.

April 14, 2010, at 01:48 PM MST by 10.84.44.72 -

Changed line 13 from:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package.

to:

''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package. More info at the [[http://docs.python.org/install/|python documentation]].

April 14, 2010, at 01:46 PM MST by 10.84.44.72 -

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'''Friday, 4/16'''\\
''Lecture:'' [[Installing packages]]. As an example, we will install the [[http://biopython.org|biopython]] package.

April 14, 2010, at 01:29 PM MST by 10.84.44.72 -

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''Lecture:'' New style classes [[new classes | example]]. See also the

to:

''Lecture:'' [[interfaces]] in Python. New style classes [[new classes | example]]. See also the

April 12, 2010, at 06:49 PM MST by 75.70.85.194 -

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''Lecture:'' Inheritance in python [[inheritance| the shapes example]]. New style classes [[new classes | example]]. See also the
python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]].\\

to:

''Lecture:'' Inheritance in python [[inheritance| the shapes example]].\\

Added lines 7-11:

'''Wednesday, 4/14'''\\
''Lecture:'' New style classes [[new classes | example]]. See also the
python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]].

April 10, 2010, at 09:19 AM MST by 71.196.160.210 -

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''Lecture:'' Operator overloading [[overloading|example]]; ~~another~~ [[cards | ~~example~~]].\\

to:

''Lecture:'' Operator overloading [[overloading|example]]; the [[cards | cards]] example.\\

April 10, 2010, at 09:18 AM MST by 71.196.160.210 -

Changed line 4 from:

''Lecture:'' Inheritance in python [[inheritance| example]]. New style classes [[new classes | example]]. See also the

to:

''Lecture:'' Inheritance in python [[inheritance| the shapes example]]. New style classes [[new classes | example]]. See also the

Changed line 12 from:

''Lecture:'' Python classes - [[shapes|~~more examples~~]]; digression: [[random numbers]]\\

to:

''Lecture:'' Python classes - representing [[shapes|shapes]]; digression: [[random numbers]]\\

April 10, 2010, at 09:15 AM MST by 71.196.160.210 -

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'''Monday, 4/12'''\

to:

'''Monday, 4/12'''\\

April 10, 2010, at 09:15 AM MST by 71.196.160.210 -

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python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]].

to:

python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]].\\

April 10, 2010, at 09:15 AM MST by 71.196.160.210 -

Added lines 1-9:

!!Week 12:

'''Monday, 4/12'''\

''Lecture:'' Inheritance in python [[inheritance| example]]. New style classes [[new classes | example]]. See also the
python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]].
''Lab:'' [[lab11 | lab 11]]\\
''Assignment:'' [[Assignment11 | Assignment 11]]

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''~~Assignments~~:'' [[Assignment10 |Assignment 10]]

to:

''Assignment:'' [[Assignment10 |Assignment 10]]

Changed lines 22-23 from:

''Lecture:'' ~~New style~~ classes [[new classes | example]]. See also the
python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]]. Inheritance [[inheritance| example]].

to:

''Lecture:'' Python classes (cont)

April 08, 2010, at 09:39 PM MST by 71.196.160.210 -

Changed lines 10-11 from:

''Reading:'': Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch15.html#operator-overloading|15]].

to:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch15.html#operator-overloading|15]].

'''Friday, 4/9'''\\
''Lecture:'' New style classes [[new classes | example]]. See also the
python [[http://docs.python.org/reference/datamodel.html#new-style-and-classic-classes | documentation]]. Inheritance [[inheritance| example]].

April 07, 2010, at 06:26 PM MST by 71.196.160.210 -

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''Lecture:'' No lecture today due to [[futurevisions.colostate.edu| future visions]].

to:

''Lecture:'' No lecture today due to [[http://futurevisions.colostate.edu| future visions]].

April 07, 2010, at 06:25 PM MST by 71.196.160.210 -

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'''Friday, 4/2'''\\
''Lecture:'' No lecture today due to [[futurevisions.colostate.edu| future visions]].

April 06, 2010, at 03:02 PM MST by 10.84.44.80 -

Added lines 7-11:

'''Wednesday, 4/7'''\\
''Lecture:'' Operator overloading [[overloading|example]]; another [[cards | example]].\\
''Reading:'': Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch15.html#operator-overloading|15]].

April 05, 2010, at 11:28 AM MST by 10.84.44.76 -

Changed line 4 from:

''Lecture:'' Python classes - [[shapes|more examples]].\\

to:

''Lecture:'' Python classes - [[shapes|more examples]]; digression: [[random numbers]]\\

April 04, 2010, at 10:27 PM MST by 71.196.160.210 -

Added lines 1-7:

!!Week 11:

'''Monday, 4/5'''\\
''Lecture:'' Python classes - [[shapes|more examples]].\\
''Lab:'' [[lab10 | lab 10]]\\
''Assignments:'' [[Assignment10 |Assignment 10]]

March 29, 2010, at 10:13 AM MST by 10.84.44.110 -

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'''Wednesday, 3/24'''\\

to:

'''Wednesday, 3/31'''\\

March 29, 2010, at 10:13 AM MST by 10.84.44.110 -

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''Assignments:'' [[Assignment9 |Assignment 9]]\\

to:

''Assignments:'' [[Assignment9 |Assignment 9]]

March 29, 2010, at 10:12 AM MST by 10.84.44.110 -

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''Lecture:'' ~~Introduction to~~ Python ~~classes.~~ ~~code [[classes introduction|examples]]~~.\\

to:

''Lecture:'' Using Python object - continued.\\

Added lines 7-9:

'''Wednesday, 3/24'''\\
''Lecture:'' Introduction to Python classes. code [[classes introduction|examples]].\\

Deleted line 10:

March 28, 2010, at 09:55 PM MST by 71.196.160.210 -

Added lines 1-9:

!!Week 10:

'''Monday, 3/29'''\\
''Lecture:'' Introduction to Python classes. code [[classes introduction|examples]].\\
''Lab:'' [[lab9 | lab 9]]\\
''Assignments:'' [[Assignment9 |Assignment 9]]\\
''Reading:'' [[http://openbookproject.net/thinkcs/python/english2e/ch13.html|chapter 13]] and [[http://openbookproject.net/thinkcs/python/english2e/ch15.html|chapter 15]]

March 25, 2010, at 08:20 AM MST by 71.196.160.210 -

Changed lines 10-13 from:

''Lecture:'' tuples ([[tuples|examples]]); functions revisited: ~~beyond fixed size~~ argument lists~~. Using~~ [[tuple_var_args|tuples]] and [[dictionary_var_args|dictionaries]].

to:

''Lecture:'' tuples ([[tuples|examples]]); functions revisited: variable length argument lists using [[tuple_var_args|tuples]] and [[dictionary_var_args|dictionaries]].

'''Friday, 3/26'''\\
''Lecture:'' Using python objects - object methods of [[using objects|strings, lists, and dictionaries]].

March 23, 2010, at 11:11 PM MST by 71.196.160.210 -

Added lines 8-10:

'''Wednesday, 3/24'''\\
''Lecture:'' tuples ([[tuples|examples]]); functions revisited: beyond fixed size argument lists. Using [[tuple_var_args|tuples]] and [[dictionary_var_args|dictionaries]].

March 21, 2010, at 09:39 PM MST by 71.196.160.210 -

Added lines 1-8:

!!Week 9:

'''Monday, 3/22'''\\
''Lecture:'' dictionaries. code [[dictionaries|examples]].\\
''Lab:'' [[lab8 | lab 8]]\\
''Assignments:'' [[Assignment8 |Assignment 8]]\\
''Reading:'' [[http://openbookproject.net/thinkcs/python/english2e/ch12.html|chapter 12]]

March 09, 2010, at 12:37 PM MST by 10.84.44.129 -

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'''Friday, 3/12'''\\
''Lecture:'' midterm

March 09, 2010, at 12:29 PM MST by 10.84.44.129 -

Added lines 8-10:

'''Wednesday, 3/10'''\\
''Lecture:'' recursion - continued. More examples: [[factorial]], [[recursive binary search]].

March 07, 2010, at 06:42 PM MST by 71.196.160.210 -

Changed lines 6-7 from:

''Assignments:'' [[Assignment7 |Assignment 7]]

to:

''Assignments:'' [[Assignment7 |Assignment 7]]\\
''Reading:'' [[http://openbookproject.net/thinkcs/python/english2e/ch11.html#recursion|chapter 11]]

March 07, 2010, at 06:37 PM MST by 71.196.160.210 -

Added lines 1-8:

!!Week 8:

'''Monday, 3/8'''\\
''Lecture:'' recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. code [[recursion|examples]].\\
''Lab:'' [[lab7 | lab 7]]\\
''Assignments:'' [[Assignment7 |Assignment 7]]

March 05, 2010, at 10:17 AM MST by 10.84.44.74 -

Changed line 12 from:

''Lecture:'' Exceptions [[exceptions | code]].\\

to:

''Lecture:'' Exceptions [[exceptions | code]]; command line arguments [[argv_example| example]].\\

March 04, 2010, at 03:13 PM MST by 10.84.44.95 -

Changed line 9 from:

''Lecture:'' algorithm efficiency (cont).\\

to:

''Lecture:'' algorithm efficiency (cont).

March 04, 2010, at 03:13 PM MST by 10.84.44.95 -

Changed lines 9-12 from:

''Lecture:'' algorithm efficiency (cont); Exceptions [[exceptions | code]].\\

to:

''Lecture:'' algorithm efficiency (cont).\\

'''Friday, 3/5'''\\
''Lecture:'' Exceptions [[exceptions | code]].\\

March 02, 2010, at 03:05 PM MST by 10.84.44.82 -

Changed line 9 from:

''Lecture:'' algorithm efficiency (cont); Exceptions [[exceptions | code]].

to:

''Lecture:'' algorithm efficiency (cont); Exceptions [[exceptions | code]].\\

March 02, 2010, at 03:05 PM MST by 10.84.44.82 -

Added lines 8-10:

'''Wednesday, 3/3'''\\
''Lecture:'' algorithm efficiency (cont); Exceptions [[exceptions | code]].
''Reading:'' Exceptions section in [[http://openbookproject.net/thinkcs/python/english2e/ch11.html#exceptions | chapter 11]].

February 28, 2010, at 06:51 PM MST by 71.196.160.210 -

Changed lines 4-5 from:

''Lecture:'' binary search [[binary search | code]];
~~measuring~~ the efficiency of algorithms [ [[Path:../../pdfs/04_complexity.pdf\\

to:

''Lecture:'' binary search [[binary search | code]]; measuring the efficiency of algorithms [ [[Path:../../pdfs/04_complexity.pdf | slides]] ]\\

February 28, 2010, at 06:50 PM MST by 71.196.160.210 -

Added lines 1-9:

!!Week 7:

'''Monday, 3/1'''\\
''Lecture:'' binary search [[binary search | code]];
measuring the efficiency of algorithms [ [[Path:../../pdfs/04_complexity.pdf\\
''Lab:'' [[lab6 | lab 6]]\\
''Assignments:'' [[Assignment6 |Assignment 6]]

Changed line 21 from:

''Lecture:'' Sorting algorithms, continued; ~~binary search [[binary search | code]].~~

to:

''Lecture:'' Sorting algorithms, continued;

February 25, 2010, at 06:32 PM MST by 71.196.160.210 -

Changed lines 9-10 from:

''Lecture:'' Sorting algorithms [ [[Path:../../pdfs/03_sorting.pdf | slides]] ]; here's the [[sorting|code]].\\

to:

''Lecture:'' Sorting algorithms [ [[Path:../../pdfs/03_sorting.pdf | slides]] ]; here's the [[sorting|code]].

Changed line 12 from:

''Lecture:'' Sorting algorithms, continued; binary search [[binary search | code]].\\

to:

''Lecture:'' Sorting algorithms, continued; binary search [[binary search | code]].

February 25, 2010, at 06:31 PM MST by 71.196.160.210 -

Changed lines 9-13 from:

''Lecture:'' Sorting algorithms [ [[Path:../../pdfs/03_sorting.pdf | slides]] ]\\

to:

''Lecture:'' Sorting algorithms [ [[Path:../../pdfs/03_sorting.pdf | slides]] ]; here's the [[sorting|code]].\\

'''Friday, 2/26'''\\
''Lecture:'' Sorting algorithms, continued; binary search [[binary search | code]].\\

February 24, 2010, at 07:01 AM MST by 71.196.160.210 -

Changed line 9 from:

''Lecture:'' Sorting algorithms ([ [[Path:../../pdfs/03_sorting.pdf | slides]] ])\\

to:

''Lecture:'' Sorting algorithms [ [[Path:../../pdfs/03_sorting.pdf | slides]] ]\\

February 24, 2010, at 07:01 AM MST by 71.196.160.210 -

Added lines 8-9:

'''Wednesday, 2/24'''\\
''Lecture:'' Sorting algorithms ([ [[Path:../../pdfs/03_sorting.pdf | slides]] ])\\

February 21, 2010, at 07:36 PM MST by 71.196.160.210 -

Changed line 4 from:

''Lecture:'' Strings (~~continued), string formatting ([[string formatting | examples~~]]).\\

to:

''Lecture:'' Strings and lists ([[strings and lists | code]]), iterators ([[iterators | code]]), files ([[files | code]]).\\

Changed lines 9-11 from:

!!Week 6:

to:

!!Week 5:

Changed line 12 from:

''Lecture:'' Strings ~~and lists~~ (~~[[strings and lists | code]]), iterators ([[iterators | code]]), files ([[files | code~~]]).\\

to:

''Lecture:'' Strings (continued), string formatting ([[string formatting | examples]]).\\

February 21, 2010, at 07:34 PM MST by 71.196.160.210 -

Changed lines 1-3 from:

!!Week 5:

'''Monday, 2/15'''\\

to:

!!Week 6:

'''Monday, 2/22'''\\

Added lines 5-13:

Changed line 23 from:

''Lecture:'' Lists are mutable ([[list mutability | code]]), lists as function parameters ([[lists as parameters | code]]), nested lists ([[nested ~~lists | code]]), strings and lists ([[strings and~~ lists | code]]).\\

to:

''Lecture:'' Lists are mutable ([[list mutability | code]]), lists as function parameters ([[lists as parameters | code]]), nested lists ([[nested lists | code]]).\\

February 16, 2010, at 08:48 AM MST by 71.196.160.210 -

Changed line 14 from:

''Lecture:'' Lists are mutable ([[list mutability | code]]), lists as function parameters ([[lists as parameters | code]]), nested lists [[nested lists | code]], strings and lists ( [[strings and lists | code]] ).\\

to:

''Lecture:'' Lists are mutable ([[list mutability | code]]), lists as function parameters ([[lists as parameters | code]]), nested lists ([[nested lists | code]]), strings and lists ([[strings and lists | code]]).\\

February 16, 2010, at 08:47 AM MST by 71.196.160.210 -

Changed line 14 from:

''Lecture:'' Lists are mutable [[list mutability | code]], lists as function parameters [[lists as parameters | code]], nested lists [[nested lists | code]], strings and lists [[strings and lists | code]].\\

to:

''Lecture:'' Lists are mutable ([[list mutability | code]]), lists as function parameters ([[lists as parameters | code]]), nested lists [[nested lists | code]], strings and lists ( [[strings and lists | code]] ).\\

February 16, 2010, at 08:46 AM MST by 71.196.160.210 -

Changed line 14 from:

''Lecture:'' Lists are mutable [[list mutability | code]], lists as function parameters [[lists as parameters | code]], nested lists [[nested lists | code]].\\

to:

''Lecture:'' Lists are mutable [[list mutability | code]], lists as function parameters [[lists as parameters | code]], nested lists [[nested lists | code]], strings and lists [[strings and lists | code]].\\

February 16, 2010, at 08:43 AM MST by 71.196.160.210 -

Changed line 11 from:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].\\

to:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].

February 16, 2010, at 08:43 AM MST by 71.196.160.210 -

Added lines 12-15:

'''Friday, 2/19'''\\
''Lecture:'' Lists are mutable [[list mutability | code]], lists as function parameters [[lists as parameters | code]], nested lists [[nested lists | code]].\\

February 15, 2010, at 12:53 PM MST by 10.84.44.68 -

Changed line 10 from:

''Lecture:'' Lists ([[~~examples~~]])\\

to:

''Lecture:'' Lists ([[lists]])\\

February 15, 2010, at 12:52 PM MST by 10.84.44.68 -

Changed line 10 from:

''Lecture:'' Lists ([[examples~~|lists~~]])\\

to:

''Lecture:'' Lists ([[examples]])\\

February 15, 2010, at 12:52 PM MST by 10.84.44.68 -

Changed lines 4-5 from:

''Lecture:'' ~~String formatting~~ ([[string formatting | examples]]). Lists ([[examples|lists]])\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].\\

to:

''Lecture:'' Strings (continued), string formatting ([[string formatting | examples]]).\\

Added lines 8-11:

'''Wednesday, 2/17'''\\

''Lecture:'' Lists ([[examples|lists]])\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].\\

February 12, 2010, at 12:37 PM MST by 10.84.44.99 -

Changed line 7 from:

''Assignments:'' [[~~Assignment3~~ |Assignment 3]]

to:

''Assignments:'' [[Assignment4 |Assignment 4]]

February 12, 2010, at 12:37 PM MST by 10.84.44.99 -

Added lines 1-9:

!!Week 5:

'''Monday, 2/15'''\\
''Lecture:'' String formatting ([[string formatting | examples]]). Lists ([[examples|lists]])\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].\\
''Lab:'' [[lab4 | lab 4]]\\
''Assignments:'' [[Assignment3 |Assignment 3]]

Changed lines 22-23 from:

''Lecture:'' ~~String formatting~~ (~~[[string formatting | examples]]~~). Lists ([[examples|lists]])\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].\\

to:

''Lecture:'' Strings (continued).\\

February 11, 2010, at 03:00 PM MST by 10.84.44.74 -

Changed line 10 from:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch07.html | 7]].\\

to:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch07.html | 7]].

February 11, 2010, at 02:59 PM MST by 10.84.44.74 -

Added lines 11-15:

'''Friday, 2/12'''\\
''Lecture:'' String formatting ([[string formatting | examples]]). Lists ([[examples|lists]])\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch09.html | 9]].\\

February 09, 2010, at 11:31 AM MST by 10.84.44.105 -

Changed line 9 from:

''Lecture:'' For loops (cont): [[nestedLoops | nested loops]]. Strings ([[string_examples| examples]].\\

to:

''Lecture:'' For loops (cont): [[nestedLoops | nested loops]]. Strings ([[string_examples| examples]]).\\

February 09, 2010, at 11:31 AM MST by 10.84.44.105 -

Changed lines 9-10 from:

''Lecture:'' For loops (cont): [[nestedLoops | nested loops]].\\

to:

''Lecture:'' For loops (cont): [[nestedLoops | nested loops]]. Strings ([[string_examples| examples]].\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch07.html | 7]].\\

February 08, 2010, at 11:40 AM MST by 129.82.18.166 -

Changed line 4 from:

''Lecture:'' While loops (cont): printing [[tables]]~~, [[nestedLoops | nested loops]].~~ Iteration using [[for loops]].\\

to:

''Lecture:'' While loops (cont): printing [[tables]]. Iteration using [[for loops]].\\

Added lines 7-10:

'''Wednesday, 2/10'''\\
''Lecture:'' For loops (cont): [[nestedLoops | nested loops]].\\

February 06, 2010, at 04:20 PM MST by 71.196.160.210 -

Changed lines 4-5 from:

''Lecture:'' While loops (cont): printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops]]\\.

to:

''Lecture:'' While loops (cont): printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops]].\\
''Lab:'' [[lab3 | Lab 3]]\\
''Assignments:'' [[Assignment3 |Assignment 3]]

Changed line 24 from:

''Lecture:'' While loops: [[inputValidation | input validation]]\\.

to:

''Lecture:'' While loops: [[inputValidation | input validation]].\\

February 05, 2010, at 09:54 AM MST by 129.82.44.241 -

Changed line 4 from:

'Lecture:'' While loops (cont): printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops]]\\.

to:

''Lecture:'' While loops (cont): printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops]]\\.

February 05, 2010, at 09:54 AM MST by 129.82.44.241 -

Added lines 1-5:

!!Week 4:

'''Monday, 2/8'''\\
'Lecture:'' While loops (cont): printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops]]\\.

Changed line 22 from:

''Lecture:'' While loops: [[inputValidation | input validation~~]], printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops~~]]\\.

to:

''Lecture:'' While loops: [[inputValidation | input validation]]\\.

February 04, 2010, at 09:22 PM MST by 71.196.160.210 -

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February 04, 2010, at 08:42 PM MST by 71.196.160.210 -

Added lines 15-16:

'''Friday, 2/5'''\\
''Lecture:'' While loops: [[inputValidation | input validation]], printing [[tables]], [[nestedLoops | nested loops]]. Iteration using [[for loops]]\\.

February 02, 2010, at 01:35 PM MST by 129.82.44.241 -

Changed line 11 from:

Iteration - the while statement. Here's an [[while example|example]].

to:

Iteration - the while statement. Here's an [[while example|example]].\\

February 02, 2010, at 01:33 PM MST by 129.82.44.241 -

Changed lines 10-11 from:

''Lecture:'' Functions that return a value. Examples: [[area]], [[divisibility]], [[absolute value]].
~~''Reading:'' Chapter [[http://openbookproject~~.~~net/thinkcs/python/english2e/ch05.html | 5~~]].\\

to:

''Lecture:'' Functions that return a value. Examples: [[area]], [[divisibility]], [[absolute value]].\\
Iteration - the while statement. Here's an [[while example|example]].
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch05.html | 5]],
chapter [[http://openbookproject.net/thinkcs/python/english2e/ch06.html | 6]] \\

February 02, 2010, at 01:27 PM MST by 129.82.44.241 -

Changed line 9 from:

'''~~Monday~~, 2/3'''\\

to:

'''Wednesday, 2/3'''\\

February 02, 2010, at 01:27 PM MST by 129.82.44.241 -

Changed lines 11-12 from:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/~~ch04~~.html | 5]].\\

to:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch05.html | 5]].\\

February 02, 2010, at 01:26 PM MST by 129.82.44.241 -

Added lines 9-11:

'''Monday, 2/3'''\\
''Lecture:'' Functions that return a value. Examples: [[area]], [[divisibility]], [[absolute value]].
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch04.html | 5]].\\

January 31, 2010, at 09:18 AM MST by 71.196.160.210 -

Added lines 6-8:

''Lab:'' [[lab2 | Lab 2]]\\
''Assignments:'' [[Assignment2 |Assignment 2]]

January 29, 2010, at 11:40 AM MST by 129.82.44.241 -

Added lines 1-6:

!!Week 3:

'''Monday, 2/1'''\\
''Lecture:'' Conditionals - the if statement [[boolean variables]], [[conditionals]], [[sort names]], [[letter grade]] calculator, a better version of [[letter grade2 | letter grade]].\\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch04.html | 4]].\\

Changed line 20 from:

''Lecture:'' Functions - continued [[local variables]], conditionals - the if statement [[boolean variables~~]], [[conditionals]], [[sort names]], [[letter grade]] calculator, a better version of [[letter grade2 | letter grade~~]].\\

to:

''Lecture:'' Functions - continued [[local variables]], conditionals - the if statement [[boolean variables]].\\

January 28, 2010, at 03:07 PM MST by 129.82.44.241 -

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January 28, 2010, at 03:06 PM MST by 129.82.44.241 -

Added line 23:

January 28, 2010, at 03:06 PM MST by 129.82.44.241 -

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Changed line 14 from:

''Lecture:'' Functions - continued [[local variables]], conditionals - the if statement [[boolean variables]], [[conditionals]], [[sort names]], [[letter grade]] calculator, a better version of [[letter grade2 | letter grade]].

to:

''Lecture:'' Functions - continued [[local variables]], conditionals - the if statement [[boolean variables]], [[conditionals]], [[sort names]], [[letter grade]] calculator, a better version of [[letter grade2 | letter grade]].\\

Added line 16:

January 28, 2010, at 03:05 PM MST by 129.82.44.241 -

Changed lines 14-15 from:

to:

''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch04.html | 4]].\\

January 28, 2010, at 03:00 PM MST by 129.82.44.241 -

Changed lines 12-14 from:

to:

'''Friday, 1/29'''\\
''Lecture:'' Functions - continued [[local variables]], conditionals - the if statement [[boolean variables]], [[conditionals]], [[sort names]], [[letter grade]] calculator, a better version of [[letter grade2 | letter grade]].

January 26, 2010, at 12:41 PM MST by 129.82.44.241 -

Changed line 9 from:

''Lecture:'' Functions [ [[Path:../../pdfs/01_~~intro~~.pdf | slides]] ]. [[draw_rectangle]], [[celsius2fahrenheit]], [[functions]].

to:

''Lecture:'' Functions [ [[Path:../../pdfs/02_functions.pdf | slides]] ]. [[draw_rectangle]], [[celsius2fahrenheit]], [[functions]].

January 26, 2010, at 12:40 PM MST by 129.82.44.241 -

Added lines 8-12:

'''Wednesday, 1/27'''\\
''Lecture:'' Functions [ [[Path:../../pdfs/01_intro.pdf | slides]] ]. [[draw_rectangle]], [[celsius2fahrenheit]], [[functions]].
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch03.html | 3]].\\

Changed line 15 from:

'''~~Wed~~, 1/20'''\\

to:

'''Wednesday, 1/20'''\\

Changed line 18 from:

'''~~Fri~~, 1/22'''\\

to:

'''Friday, 1/22'''\\

January 24, 2010, at 09:04 PM MST by 71.196.160.210 -

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!!!Week 1:

to:

!!Week 1:

January 24, 2010, at 09:03 PM MST by 71.196.160.210 -

Added lines 1-7:

!!Week 2:

'''Monday, 1/25'''\\
''Lecture:'' Python [[expressions]], and [[input]]. Putting it together: [[celsius2fahreheit | Celsius to fahreheit converter]] \\
''Lab:'' [[lab1]]\\
''Assignments:'' [[Assignment1]]

Changed lines 17-22 from:

!!!Week 2:

''Lecture:'' Python [[expressions]], and [[input]]. \\
''Lab:'' [[lab1]]\\
''Assignments:'' [[Assignment1]]

to:

!

January 24, 2010, at 03:56 PM MST by 71.196.160.210 -

Changed lines 13-15 from:

''Lab:'' [[lab1]]

to:

''Lab:'' [[lab1]]\\
''Assignments:'' [[Assignment1]]

January 24, 2010, at 02:31 PM MST by 71.196.160.210 -

Changed lines 12-13 from:

''Lecture:'' Python [[expressions]], and [[input]]. \\

to:

''Lecture:'' Python [[expressions]], and [[input]]. \\
''Lab:'' [[lab1]]

January 22, 2010, at 10:25 AM MST by 129.82.44.241 -

Changed line 12 from:

''Lecture:'' Python[[expressions]], and [[input]]. \\

to:

''Lecture:'' Python [[expressions]], and [[input]]. \\

January 22, 2010, at 10:25 AM MST by 129.82.44.241 -

Changed line 7 from:

''Lecture:'' Our [[first program]], [[programming errors]], Python [[types]], [[variables]]~~, [[expressions]], and [[input]].~~ \\

to:

''Lecture:'' Our [[first program]], [[programming errors]], Python [[types]], [[variables]]\\

Added lines 9-12:

!!!Week 2:

''Lecture:'' Python[[expressions]], and [[input]]. \\

January 21, 2010, at 01:30 PM MST by 129.82.44.241 -

Changed line 7 from:

''Lecture:'' Our [[~~FirstProgram~~]], [[programming errors]], Python [[types]], [[variables]], [[expressions]], and [[input]]. \\

to:

''Lecture:'' Our [[first program]], [[programming errors]], Python [[types]], [[variables]], [[expressions]], and [[input]]. \\

January 21, 2010, at 01:29 PM MST by 129.82.44.241 -

Changed line 4 from:

''~~Lectures~~:'' Course introduction; [[http://www.sciencemag.org/cgi/content/short/325/5940/541 | why programming?]] [ [[Path:../../pdfs/01_intro.pdf | slides]] ] \\

to:

''Lecture:'' Course introduction; [[http://www.sciencemag.org/cgi/content/short/325/5940/541 | why programming?]] [ [[Path:../../pdfs/01_intro.pdf | slides]] ] \\

Changed lines 6-8 from:

to:

'''Fri, 1/22'''\\
''Lecture:'' Our [[FirstProgram]], [[programming errors]], Python [[types]], [[variables]], [[expressions]], and [[input]]. \\
''Reading:'' Chapter [[http://openbookproject.net/thinkcs/python/english2e/ch02.html | 2]].\\

January 21, 2010, at 01:25 PM MST by 129.82.44.241 -

Changed lines 1-3 from:

!!Week 1:

~~!!!~~Wed, 1/20

to:

!!!Week 1:

'''Wed, 1/20'''\\

January 21, 2010, at 01:24 PM MST by 129.82.44.241 -

Changed lines 1-2 from:

!!!Week 1: 1/20

to:

!!Week 1:

!!!Wed, 1/20

Changed line 6 from:

~~''Assignments:'' Coming soon~~

to:

January 19, 2010, at 03:03 PM MST by 129.82.44.241 -

Changed line 3 from:

''Lectures:'' Course introduction; [[http://www.sciencemag.org/cgi/content/short/325/5940/541 | why programming?]]\\

to:

''Lectures:'' Course introduction; [[http://www.sciencemag.org/cgi/content/short/325/5940/541 | why programming?]] [ [[Path:../../pdfs/01_intro.pdf | slides]] ] \\

January 18, 2010, at 02:56 PM MST by 129.82.44.241 -

Changed lines 3-4 from:

''Lectures:'' Course introduction; \\
''Reading:'' \\

to:

''Lectures:'' Course introduction; [[http://www.sciencemag.org/cgi/content/short/325/5940/541 | why programming?]]\\
''Reading:'' Chapter 1 in [[http://openbookproject.net/thinkcs/python/english2e/ch01.html | How to think like a computer scientist]]. \\

January 11, 2010, at 01:24 PM MST by 129.82.44.241 -

Changed lines 1-92 from:

!!!Week 1: 8/25

''Lectures:'' Course introduction; cs160 recap
[ [[Path:../../pdfs/01_intro.pdf | slides]] ] (updated)\\
''Reading:'' 160 material: chapters 1-4, 7 in the Java book.\\
''Recitation:'' [[ recit1 | cs160 recap]]\\
''Assignments:'' First programming assignment is [[assignments | available]]

!!!Week 2: 9/1

''Lectures:'' Java classes, objects, and object oriented programming
[ [[Path:../../pdfs/02_classes.pdf | slides]] ]. Here's the code for the [[Die]] class. Quiz on Thu.\\
''Reading:'' Chapter 5 in the Java book.\\
''Recitation:'' [[ recit2 | Getting familiar with Classes]]\\
''Assignments:'' Programming assignment is [[assignments | available]]

!!!Week 3: 9/8

''Lectures:'' More on Java classes [ [[Path:../../pdfs/03_classes_cont.pdf | slides]] ] (updated thu). The code for the [[Account]] class. Quiz on Thu.\\
''Reading:'' Chapters 5-6 in Savitch (5 in Lewis).\\
''Recitation:'' [[ recit3 | More on Classes]]\\

!!!Week 4: 9/15

''Lectures:'' Assertions, pre/post conditions [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Javadoc commenting of code. Here's an [[AccountCommented | example]]. ArrayList [ [[Path:../../pdfs/04_arrayList.pdf | slides]] ]. Here's the [[ArrayListExample| example]] we worked on in class . Quiz on Thu.\\
''Reading:'' Assertions - chapter 4.2 in Savitch. ArrayList - chapter 12.1 in Savitch; \\
''Recitation:'' [[ recit4 | A Break from Classes]]\\

!!!Week 5: 9/22

''Lectures:'' Recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. Quiz on Thu. More recursion [ [[Path:../../pdfs/05_recursion_cont.pdf | slides]] ]. The [[maze]] example.\\
''Reading:'' Chapter 11 in Savitch, or Chapter 12 in Lewis, or Chapter 3 in Walls and Mirrors.\\
''Recitation:'' [[ recit5 | Recursion]]\\

!!!Week 6: 9/29

''Lectures:'' Counting [ [[Path:../../pdfs/06_counting.pdf | slides]] ]. Midterm on Thu.\\
''Reading:'' Chapter 5 in Rosen.\\
''Recitation:'' [[ recit6 | Recursion]]\\

!!!Week 7: 10/6

''Lectures:'' Permutations, r-permutation, combinations, and the traveling salesman problem [ [[Path:../../pdfs/07_permutations.pdf | slides]] ] (updated on thursday). Quiz on Thu.\\
''Reading:'' Chapter 5 in Rosen.\\
''Recitation:'' [[ recit7 | Enumeration and Counting]]\\

!!!Week 8: 10/13

''Lectures:'' Induction [ [[Path:../../pdfs/08_induction.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Chapter 4.1,4.2 in Rosen.\\
''Assignments:'' A written assignment on induction is [[assignments | available]]

!!!Week 9: 10/20

''Lectures:'' Inheritance [ [[Path:../../pdfs/09_inheritance.pdf | slides]] ]. Inheritance and polymorphism [ [[Path:../../pdfs/09_inheritance2.pdf | slides]] ] Quiz on Thu.\\
''Reading:'' Chapter 8 in either of the Java books.\\
''Recitation:'' [[ recit9 | Inheritance]]\\

!!!Week 10: 10/27

''Lectures:'' Interfaces [ [[Path:../../pdfs/10_interfaces.pdf | slides]] ]. (updated after thursday's class) [ [[Path:../../code/staffExample.tar | Code]] ] for the StaffMember/Employee etc. example. Quiz on Thu.\\
''Reading:'' Chapter 8 in Savitch, chapter 9 in Lewis.\\
''Recitation:'' [[recit10 | Interfaces]]\\

!!!Week 11: 11/3

''Lectures:'' Midterm on Tue. Static again [ [[Path:../../pdfs/11_static.pdf | slides]] ]. Linked lists [ [[Path:../../pdfs/11_linked_lists.pdf | slides]] ]\\
''Reading:'' Chapter 5 in Walls and Mirrors, 12.1 in Savitch, 14.4 in Lewis.\\
''Recitation:'' Programming quiz\\

!!!Week 12: 11/10

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ] (updated on wed). Linked list [[LinkedList | code]] and doubly linked list [[DoublyLinkedList | code]]. \\
''Reading:'' Chapter 5 in Walls and Mirrors, 12.1 in Savitch, 14.4 in Lewis.\\
''Recitation:'' [[recit12 | Linked Lists]]\\

!!!Week 13: 11/17

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] (updated on thu) Here's a nice [[ http://math.hws.edu/TMCM/java/xSortLab/ | java applet]] that illustrates the sorting algorithms we looked at. Obama being asked about [[http://www.youtube.com/watch?v=k4RRi_ntQc8|sorting]]\\
''Reading:'' Chapter 13 in Lewis, Chapter 10 in Walls and Mirrors\\
''Recitation:'' [[recit13 | Sorting]]\\

!!!Week 14: 12/1

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_junit.pdf | slides]] ]. Graphics, GUI and Applets in Java [ [[Path:../../pdfs/16_graphics_gui.pdf | slides]] ] and [ [[Path:../../code/graphics_gui.tgz | code]] ]\\
''Reading:'' Packages: Chapter 11 in Lewis, 6.7 in Savitch. Lewis covers version 3 of JUnit.\\
''Recitation:'' [[recit14 | JUnit]]\\

!!!Week 15: 12/8
''Lectures:'' Java Graphics, GUI and Applets - continued (tuesday). Review (thursday).\\
''Recitation:'' Programming final.

to:

!!!Week 1: 1/20

''Lectures:'' Course introduction; \\
''Reading:'' \\
''Assignments:'' Coming soon

December 07, 2009, at 09:30 PM MST by 71.237.92.151 -

Added lines 89-92:

!!!Week 15: 12/8
''Lectures:'' Java Graphics, GUI and Applets - continued (tuesday). Review (thursday).\\
''Recitation:'' Programming final.

December 02, 2009, at 07:46 PM MST by 71.237.92.151 -

Changed line 86 from:

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_junit.pdf | slides]] ]. Graphics, GUI and Applets in Java [ [[Path:../../pdfs/16_graphics_gui.pdf | slides]] ]\\

to:

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_junit.pdf | slides]] ]. Graphics, GUI and Applets in Java [ [[Path:../../pdfs/16_graphics_gui.pdf | slides]] ] and [ [[Path:../../code/graphics_gui.tgz | code]] ]\\

December 02, 2009, at 07:42 PM MST by 71.237.92.151 -

Changed line 86 from:

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_junit.pdf | slides]] ] \\

to:

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_junit.pdf | slides]] ]. Graphics, GUI and Applets in Java [ [[Path:../../pdfs/16_graphics_gui.pdf | slides]] ]\\

December 02, 2009, at 04:15 PM MST by 129.82.47.181 -

Changed line 88 from:

''Recitation:'' \\

to:

''Recitation:'' [[recit14 | JUnit]]\\

November 30, 2009, at 03:05 PM MST by 129.82.44.241 -

Changed line 86 from:

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_~~testing~~.pdf | slides]] ] \\

to:

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_junit.pdf | slides]] ] \\

November 30, 2009, at 03:05 PM MST by 129.82.44.241 -

Changed lines 81-88 from:

''Recitation:'' [[recit13 | Sorting]]\\

to:

''Recitation:'' [[recit13 | Sorting]]\\

!!!Week 14: 12/1

''Lectures:'' Java packages [ [[Path:../../pdfs/14_packages.pdf | slides]] ]. JUnit and testing [ [[Path:../../pdfs/15_testing.pdf | slides]] ] \\
''Reading:'' Packages: Chapter 11 in Lewis, 6.7 in Savitch. Lewis covers version 3 of JUnit.\\
''Recitation:'' \\

November 29, 2009, at 06:47 PM MST by 71.237.92.151 -

Changed line 79 from:

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] (updated on thu) Here's a nice [[ http://math.hws.edu/TMCM/java/xSortLab/ | java applet]] that illustrates the sorting algorithms we looked at\\

to:

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] (updated on thu) Here's a nice [[ http://math.hws.edu/TMCM/java/xSortLab/ | java applet]] that illustrates the sorting algorithms we looked at. Obama being asked about [[http://www.youtube.com/watch?v=k4RRi_ntQc8|sorting]]\\

November 23, 2009, at 12:31 PM MST by 129.82.44.241 -

Changed line 79 from:

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] (updated on thu) \\

to:

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] (updated on thu) Here's a nice [[ http://math.hws.edu/TMCM/java/xSortLab/ | java applet]] that illustrates the sorting algorithms we looked at\\

November 19, 2009, at 03:16 PM MST by 129.82.44.241 -

Changed line 79 from:

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] \\

to:

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] (updated on thu) \\

Changed line 81 from:

''Recitation:'' [[recit13 | Sorting]]\\

to:

''Recitation:'' [[recit13 | Sorting]]\\

November 18, 2009, at 04:34 PM MST by 129.82.47.180 -

Changed line 81 from:

''Recitation:'' \\

to:

''Recitation:'' [[recit13 | Sorting]]\\

November 17, 2009, at 11:11 AM MST by 129.82.44.241 -

Added lines 76-81:

!!!Week 13: 11/17

''Lectures:'' Sorting [ [[Path:../../pdfs/13_sorting.pdf | slides]] ] \\
''Reading:'' Chapter 13 in Lewis, Chapter 10 in Walls and Mirrors\\
''Recitation:'' \\

November 12, 2009, at 03:34 PM MST by 71.237.92.151 -

Changed line 73 from:

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ] (updated on wed). Linked list [[LinkedList | code]] \\

to:

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ] (updated on wed). Linked list [[LinkedList | code]] and doubly linked list [[DoublyLinkedList | code]]. \\

November 12, 2009, at 03:33 PM MST by 71.237.92.151 -

Changed line 73 from:

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ] (updated on wed)\\

to:

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ] (updated on wed). Linked list [[LinkedList | code]] \\

November 11, 2009, at 09:30 PM MST by 71.237.92.151 -

Changed line 73 from:

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ]\\

to:

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ] (updated on wed)\\

November 11, 2009, at 04:02 PM MST by 129.82.47.60 -

Changed line 75 from:

to:

''Recitation:'' [[recit12 | Linked Lists]]\\

November 10, 2009, at 09:06 AM MST by 129.82.44.241 -

Added lines 70-75:

!!!Week 12: 11/10

''Lectures:'' Linked lists [ [[Path:../../pdfs/12_linked_lists2.pdf | slides]] ]\\
''Reading:'' Chapter 5 in Walls and Mirrors, 12.1 in Savitch, 14.4 in Lewis.\\

November 05, 2009, at 09:04 AM MST by 129.82.44.241 -

Changed lines 63-69 from:

''Recitation:'' [[recit10 | Interfaces]]\\

to:

''Recitation:'' [[recit10 | Interfaces]]\\

!!!Week 11: 11/3

''Lectures:'' Midterm on Tue. Static again [ [[Path:../../pdfs/11_static.pdf | slides]] ]. Linked lists [ [[Path:../../pdfs/11_linked_lists.pdf | slides]] ]\\
''Reading:'' Chapter 5 in Walls and Mirrors, 12.1 in Savitch, 14.4 in Lewis.\\
''Recitation:'' Programming quiz\\

October 31, 2009, at 08:04 PM MST by 71.237.92.151 -

Changed line 61 from:

''Lectures:'' Interfaces [ [[Path:../../pdfs/10_interfaces.pdf | slides]] ]. [ [[Path:../../code/staffExample.tar | Code]] ] for the StaffMember/Employee etc. example. Quiz on Thu.\\

to:

''Lectures:'' Interfaces [ [[Path:../../pdfs/10_interfaces.pdf | slides]] ]. (updated after thursday's class) [ [[Path:../../code/staffExample.tar | Code]] ] for the StaffMember/Employee etc. example. Quiz on Thu.\\

October 29, 2009, at 12:22 PM MST by 129.82.47.56 -

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to:

''Recitation:'' [[recit10 | Interfaces]]\\

October 27, 2009, at 11:15 AM MST by 129.82.44.241 -

Changed line 61 from:

''Lectures:'' Interfaces [ [[Path:../../pdfs/10_interfaces.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' Interfaces [ [[Path:../../pdfs/10_interfaces.pdf | slides]] ]. [ [[Path:../../code/staffExample.tar | Code]] ] for the StaffMember/Employee etc. example. Quiz on Thu.\\

October 26, 2009, at 09:19 PM MST by 71.237.92.151 -

Changed line 59 from:

!!!Week 9: 10/27

to:

!!!Week 10: 10/27

October 26, 2009, at 09:19 PM MST by 71.237.92.151 -

Added lines 58-63:

!!!Week 9: 10/27

''Lectures:'' Interfaces [ [[Path:../../pdfs/10_interfaces.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Chapter 8 in Savitch, chapter 9 in Lewis.\\

October 22, 2009, at 11:07 AM MST by 129.82.44.241 -

Changed line 55 from:

''Lectures:'' Inheritance [ [[Path:../../pdfs/09_inheritance.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' Inheritance [ [[Path:../../pdfs/09_inheritance.pdf | slides]] ]. Inheritance and polymorphism [ [[Path:../../pdfs/09_inheritance2.pdf | slides]] ] Quiz on Thu.\\

October 21, 2009, at 02:29 PM MST by 129.82.47.60 -

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to:

''Recitation:'' [[ recit9 | Inheritance]]\\

October 20, 2009, at 08:54 AM MST by 129.82.44.241 -

Added lines 52-57:

!!!Week 9: 10/20

''Lectures:'' Inheritance [ [[Path:../../pdfs/09_inheritance.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Chapter 8 in either of the Java books.\\

October 15, 2009, at 09:04 AM MST by 129.82.44.241 -

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''Assignments:'' A written assignment on induction is [[assignments | available]]

October 12, 2009, at 02:17 PM MST by 129.82.44.241 -

Changed line 32 from:

''Reading:'' Chapter 11 in Savitch, or Chapter 12 in Lewis, or Chapter 3 in Walls and Mirrors.

to:

''Reading:'' Chapter 11 in Savitch, or Chapter 12 in Lewis, or Chapter 3 in Walls and Mirrors.\\

Changed line 38 from:

''Reading:'' Chapter 5 in Rosen.

to:

''Reading:'' Chapter 5 in Rosen.\\

Changed line 44 from:

''Reading:'' Chapter 5 in Rosen.

to:

''Reading:'' Chapter 5 in Rosen.\\

Added lines 47-50:

!!!Week 8: 10/13

''Lectures:'' Induction [ [[Path:../../pdfs/08_induction.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Chapter 4.1,4.2 in Rosen.\\

October 08, 2009, at 03:21 PM MST by 129.82.44.241 -

Changed line 43 from:

''Lectures:'' Permutations, r-permutation, combinations, and the traveling salesman problem [ [[Path:../../pdfs/07_permutations.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' Permutations, r-permutation, combinations, and the traveling salesman problem [ [[Path:../../pdfs/07_permutations.pdf | slides]] ] (updated on thursday). Quiz on Thu.\\

October 07, 2009, at 04:36 PM MST by 129.82.44.247 -

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''Recitation:'' [[ recit7 | Enumeration and Counting]]\\

October 06, 2009, at 11:04 AM MST by 129.82.44.241 -

Changed line 43 from:

''Lectures:'' Permutations, r-permutation, combinations, and the traveling salesman problem [ [[Path:../../pdfs/07_permutations.pdf | slides]] ]. ~~Midterm~~ on Thu.\\

to:

''Lectures:'' Permutations, r-permutation, combinations, and the traveling salesman problem [ [[Path:../../pdfs/07_permutations.pdf | slides]] ]. Quiz on Thu.\\

October 06, 2009, at 11:04 AM MST by 129.82.44.241 -

Added lines 40-44:

!!!Week 7: 10/6

''Lectures:'' Permutations, r-permutation, combinations, and the traveling salesman problem [ [[Path:../../pdfs/07_permutations.pdf | slides]] ]. Midterm on Thu.\\
''Reading:'' Chapter 5 in Rosen.

September 30, 2009, at 04:30 PM MST by 129.82.47.180 -

Added line 39:

''Recitation:'' [[ recit6 | Recursion]]\\

September 28, 2009, at 09:50 PM MST by 71.237.92.151 -

Added lines 34-38:

!!!Week 6: 9/29

''Lectures:'' Counting [ [[Path:../../pdfs/06_counting.pdf | slides]] ]. Midterm on Thu.\\
''Reading:'' Chapter 5 in Rosen.

September 24, 2009, at 11:27 AM MST by 129.82.44.241 -

Changed line 31 from:

''Lectures:'' Recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. Quiz on Thu. More recursion [ [[Path:../../pdfs/05_recursion_cont.pdf | slides]] ]\\

to:

''Lectures:'' Recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. Quiz on Thu. More recursion [ [[Path:../../pdfs/05_recursion_cont.pdf | slides]] ]. The [[maze]] example.\\

September 24, 2009, at 11:25 AM MST by 129.82.44.241 -

Changed line 31 from:

''Lectures:'' Recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' Recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. Quiz on Thu. More recursion [ [[Path:../../pdfs/05_recursion_cont.pdf | slides]] ]\\

September 23, 2009, at 04:30 PM MST by 129.82.47.180 -

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to:

''Recitation:'' [[ recit5 | Recursion]]\\

September 21, 2009, at 07:40 PM MST by 67.162.146.156 -

Changed lines 29-33 from:

to:

!!!Week 5: 9/22

''Lectures:'' Recursion [ [[Path:../../pdfs/05_recursion.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Chapter 11 in Savitch, or Chapter 12 in Lewis, or Chapter 3 in Walls and Mirrors.

September 17, 2009, at 02:24 PM MST by 129.82.44.241 -

Changed line 25 from:

''Lectures:'' Assertions, pre/post conditions [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Javadoc commenting of code. Here's an [[AccountCommented | example]]. ArrayList [ [[Path:../../pdfs/04_arrayList.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' Assertions, pre/post conditions [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Javadoc commenting of code. Here's an [[AccountCommented | example]]. ArrayList [ [[Path:../../pdfs/04_arrayList.pdf | slides]] ]. Here's the [[ArrayListExample| example]] we worked on in class . Quiz on Thu.\\

September 17, 2009, at 08:59 AM MST by 129.82.44.241 -

Changed lines 25-26 from:

''Lectures:'' Assertions, pre/post conditions [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Javadoc commenting of code. Here's an [[AccountCommented | example]]. ~~Quiz on Thu~~.\\
''Reading:'' Assertions - chapter 4.~~2 in Savitch~~.\\

to:

''Lectures:'' Assertions, pre/post conditions [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Javadoc commenting of code. Here's an [[AccountCommented | example]]. ArrayList [ [[Path:../../pdfs/04_arrayList.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Assertions - chapter 4.2 in Savitch. ArrayList - chapter 12.1 in Savitch; \\

September 16, 2009, at 02:38 PM MST by 98.245.152.40 -

Changed line 27 from:

''Recitation:''

to:

''Recitation:'' [[ recit4 | A Break from Classes]]\\

September 15, 2009, at 02:59 PM MST by 129.82.44.241 -

Changed line 25 from:

''Lectures:'' ~~More on Java classes~~ [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' Assertions, pre/post conditions [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Javadoc commenting of code. Here's an [[AccountCommented | example]]. Quiz on Thu.\\

September 14, 2009, at 07:27 PM MST by 67.162.146.156 -

Changed lines 17-18 from:

!!!Week 4: 9/8

to:

!!!Week 3: 9/8

Changed line 23 from:

!!!Week 3: 9/15

to:

!!!Week 4: 9/15

September 14, 2009, at 07:27 PM MST by 67.162.146.156 -

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!!!Week 3: 9/8

to:

!!!Week 4: 9/8

September 14, 2009, at 07:26 PM MST by 67.162.146.156 -

Added lines 22-30:

!!!Week 3: 9/15

''Lectures:'' More on Java classes [ [[Path:../../pdfs/04_assertions.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Assertions - chapter 4.2 in Savitch.\\
''Recitation:''

September 10, 2009, at 09:10 AM MST by 129.82.44.241 -

Changed line 19 from:

''Lectures:'' More on Java classes [ [[Path:../../pdfs/03_classes_cont.pdf | slides]] ]. The code for the [[Account]] class. Quiz on Thu.\\

to:

''Lectures:'' More on Java classes [ [[Path:../../pdfs/03_classes_cont.pdf | slides]] ] (updated thu). The code for the [[Account]] class. Quiz on Thu.\\

September 09, 2009, at 02:37 PM MST by 129.82.47.232 -

Changed line 21 from:

''Recitation:'' \\

to:

''Recitation:'' [[ recit3 | More on Classes]]\\

September 08, 2009, at 11:27 AM MST by 129.82.44.241 -

Changed line 19 from:

''Lectures:'' More on Java classes [ [[Path:../../pdfs/03_classes_cont.pdf | slides]] ]. Quiz on Thu.\\

to:

''Lectures:'' More on Java classes [ [[Path:../../pdfs/03_classes_cont.pdf | slides]] ]. The code for the [[Account]] class. Quiz on Thu.\\

September 08, 2009, at 08:59 AM MST by 129.82.44.241 -

Changed lines 14-21 from:

''Recitation:'' [[ recit2 | Getting familiar with Classes]]\\

to:

''Recitation:'' [[ recit2 | Getting familiar with Classes]]\\
''Assignments:'' Programming assignment is [[assignments | available]]

!!!Week 3: 9/8

''Lectures:'' More on Java classes [ [[Path:../../pdfs/03_classes_cont.pdf | slides]] ]. Quiz on Thu.\\
''Reading:'' Chapters 5-6 in Savitch (5 in Lewis).\\
''Recitation:'' \\

September 02, 2009, at 05:29 PM MST by 67.162.146.156 -

Changed line 12 from:

[ [[Path:../../pdfs/02_classes.pdf | slides]] ]. Here's the code for the [[Die]] class. \\

to:

[ [[Path:../../pdfs/02_classes.pdf | slides]] ]. Here's the code for the [[Die]] class. Quiz on Thu.\\

September 02, 2009, at 02:53 PM MST by 129.82.47.208 -

Added line 14:

''Recitation:'' [[ recit2 | Getting familiar with Classes]]\\

September 01, 2009, at 11:21 AM MST by 129.82.44.241 -

Changed line 12 from:

[ [[Path:../../pdfs/02_classes.pdf | slides]] ] \\

to:

[ [[Path:../../pdfs/02_classes.pdf | slides]] ]. Here's the code for the [[Die]] class. \\

September 01, 2009, at 09:00 AM MST by 129.82.44.241 -

Changed line 12 from:

[ [[Path:../../pdfs/02_classes.pdf | slides]] ] ~~(updated)~~\\

to:

[ [[Path:../../pdfs/02_classes.pdf | slides]] ] \\

September 01, 2009, at 08:59 AM MST by 129.82.44.241 -

Changed line 9 from:

!!!Week 1: 8/25

to:

!!!Week 2: 9/1

September 01, 2009, at 08:59 AM MST by 129.82.44.241 -

Added lines 8-13:

!!!Week 1: 8/25

''Lectures:'' Java classes, objects, and object oriented programming
[ [[Path:../../pdfs/02_classes.pdf | slides]] ] (updated)\\
''Reading:'' Chapter 5 in the Java book.\\

August 27, 2009, at 09:08 AM MST by 129.82.44.235 -

Changed line 4 from:

[ [[Path:../../pdfs/01_intro.pdf | slides]] ]\\

to:

[ [[Path:../../pdfs/01_intro.pdf | slides]] ] (updated)\\

August 24, 2009, at 12:57 PM MST by 129.82.44.235 -

Changed lines 4-8 from:

~~>>comment<<~~
[ [[Path:../../pdfs/~~introduction~~.pdf | slides]] ]\\
~~>><<~~
''Reading:'' ~~Chapters~~ 1-4, 7 in the Java book.\\
''Recitation:'' \\

to:

[ [[Path:../../pdfs/01_intro.pdf | slides]] ]\\
''Reading:'' 160 material: chapters 1-4, 7 in the Java book.\\
''Recitation:'' [[ recit1 | cs160 recap]]\\

August 18, 2009, at 04:00 PM MST by 129.82.44.242 -

Deleted line 8:

~~>>comment<<~~

Deleted line 9:

~~>><<~~

August 18, 2009, at 03:58 PM MST by 129.82.44.242 -

Changed lines 3-4 from:

''Lectures:'' Course introduction; cs160 recap [ [[Path:../../pdfs/introduction.pdf | slides]] ]\\
''Reading:'' ~~Chapter~~ 1 in ~~Walls and Mirrors~~.\\

to:

''Lectures:'' Course introduction; cs160 recap
>>comment<<
[ [[Path:../../pdfs/introduction.pdf | slides]] ]\\
>><<
''Reading:'' Chapters 1-4, 7 in the Java book.\\

Added line 9:

>>comment<<

Added line 11:

>><<

August 16, 2009, at 08:44 PM MST by 67.176.39.82 -

Changed line 4 from:

''Reading:'' Chapter 4 in Walls and Mirrors.\\

to:

''Reading:'' Chapter 1 in Walls and Mirrors.\\

August 16, 2009, at 08:42 PM MST by 67.176.39.82 -

Changed lines 1-3 from:

!!!Week 1: 1/21 - 1/23

''Lectures:'' Course introduction; ~~abstract data types (ADTs)~~ [ [[Path:../../pdfs/introduction.pdf | slides]] ]\\

to:

!!!Week 1: 8/25

''Lectures:'' Course introduction; cs160 recap [ [[Path:../../pdfs/introduction.pdf | slides]] ]\\

Changed line 5 from:

''Recitation:'' ~~No recitations this week~~\\

to:

''Recitation:'' \\

Deleted lines 6-94:

!!!Week 2: 1/26 - 1/30

''Lectures:'' Measuring the efficiency of algorithms [ [[Path:../../pdfs/complexity.pdf | slides]] ]\\
''Reading:'' Sections 3.2,3.3 in Rosen, Section 10.1 in Walls and Mirrors.\\
''Recitation:'' Using checkin, review of linked lists, help on programming assignment\\

!!!Week 3: 2/2 - 2/6

''Lectures:'' Stacks and Queues [ [[Path:../../pdfs/stacksAndQueues.pdf | slides]] ]\\
''Reading:'' chapters 7 and 8 in Walls and Mirrors\\
''Recitation:'' Review of big-O analysis, generics, stacks\\

''Assignments:'' Second programming assignment is [[assignments | available]]

!!!Week 4: 2/9 - 2/13

''Lectures:'' Queues (cont). Advanced sorting algorithms using divide and conquer strategies; evaluating complexity of recursive algorithms [ [[Path:../../pdfs/divide-conquer.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors 10.2, Rosen 7.1, 7.3\\
''Recitation:'' Programming a queue; work on programming assignment\\

!!!Week 5: 2/16 - 2/20

''Lectures:'' Sorting algorithms using divide and conquer strategies (cont)\\
''Reading:'' Walls and Mirrors 10.2, Rosen 7.1, 7.3\\
''Recitation:'' recursion\\
''Assignments:'' Second written assignment is [[assignments | available]]

!!!Week 6: 2/23 - 2/27

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees\\ [ [[Path:../../pdfs/trees.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 11\\
''Recitation:'' Review for midterm, recursion

!!!Week 7: 3/2 - 3/6

''Lectures:'' Trees, binary search trees (cont)\\
''Reading:'' Walls and Mirrors ch. 11\\
''Recitation:'' Iterators, recursion

!!!Week 8: 3/9 - 3/13

''Lectures:'' Priority queues and heaps [ [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 12.2\\
''Recitation:'' More iterators

!!!Week 9: 3/23 - 3/27

''Lectures:'' Monday: grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] Wednesday: Working in teams - a talk by Debbie Bartlett. Friday: Balanced search trees [ [[Path:../../pdfs/balancedTrees.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 6.2, ch. 12,13\\
''Recitation:'' implementing a heap

!!!Week 10: 3/30 - 4/3

''Lectures:'' Balanced search trees (cont). Friday: graphs [ [[Path:../../pdfs/graphs1.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 13; ch. 14.1-14.2\\
''Recitation:'' programming quiz. You will use the [[http://www.cs.colostate.edu/~hamiltom/cs200/BinaryTree.java | binary tree]] and [[http://www.cs.colostate.edu/~hamiltom/cs200/BT_Node.java | tree node]] classes.

!!!Week 11: 4/6 - 4/10

''Lectures:'' Monday: graphs (cont). Wednesday: midterm. Friday: more graphs [ [[Path:../../pdfs/graphs2.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 14\\
''Recitation:'' help with programming assignment, go over written hw, command-line arguments, review for midterm

!!!Week 12: 4/13 - 4/17

''Lectures:'' graphs - directed acyclic graphs and topological sorting of graphs; graph algorithms [ [[Path:../../pdfs/graphs3.pdf | slides]] ], relations [ [[Path:../../pdfs/relations.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 14, Rosen 8.1-8.5 (relations)\\
''Recitation:'' Implementing graphs.

!!!Week 14: 4/27 - 5/1

''Lectures:'' Dijkstra's algorithm (slides in the graph algorithms set), more problems on graphs [ [[Path:../../pdfs/graphs4.pdf | slides]] ]\\
hash tables [ [[Path:../../pdfs/hashtables.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 14 (graphs), 13 (hash tables) \\
''Recitation:'' Review of relations and grammars.

!!!Week 15: 5/4 - 5/8

''Lectures:'' hash tables (cont); discussion of final [ [[Path:../../pdfs/study_guide.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 13 \\
''Recitation:'' Programming part of final.

!!!Week 16:

Wed -- special review session 1-3pm at CSB130.
Thu -- final exam at 7am.

May 08, 2009, at 01:36 PM MST by Asa -

Added lines 90-94:

!!!Week 16:

Wed -- special review session 1-3pm at CSB130.
Thu -- final exam at 7am.

May 08, 2009, at 01:34 PM MST by Asa -

Added lines 84-89:

!!!Week 15: 5/4 - 5/8

''Lectures:'' hash tables (cont); discussion of final [ [[Path:../../pdfs/study_guide.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 13 \\
''Recitation:'' Programming part of final.

May 01, 2009, at 01:44 PM MST by Asa -

Changed line 81 from:

hash tables [ [[Path:../../pdfs/hashtables.pdf | slides]] ]

to:

hash tables [ [[Path:../../pdfs/hashtables.pdf | slides]] ]\\

May 01, 2009, at 01:43 PM MST by Asa -

Changed lines 81-82 from:

~~''Reading:'' Walls and Mirrors ch~~. 14 \\

to:

hash tables [ [[Path:../../pdfs/hashtables.pdf | slides]] ]
''Reading:'' Walls and Mirrors ch. 14 (graphs), 13 (hash tables) \\

April 29, 2009, at 01:26 PM MST by Asa -

Changed line 80 from:

''Lectures:'' Dijkstra's algorithm (slides in the graph algorithms set), more problems on graphs [ [[Path:../../pdfs/~~graphs3~~.pdf | slides]] ]\\

to:

''Lectures:'' Dijkstra's algorithm (slides in the graph algorithms set), more problems on graphs [ [[Path:../../pdfs/graphs4.pdf | slides]] ]\\

April 29, 2009, at 01:09 PM MST by Asa -

Changed line 80 from:

''Lectures:'' Dijkstra's algorithm, more problems on graphs [ [[Path:../../pdfs/graphs3.pdf | slides]] ]\\

to:

''Lectures:'' Dijkstra's algorithm (slides in the graph algorithms set), more problems on graphs [ [[Path:../../pdfs/graphs3.pdf | slides]] ]\\

April 29, 2009, at 01:08 PM MST by Asa -

Changed lines 80-81 from:

''Lectures:'' ~~Relations,~~ Dijkstra's algorithm, more problems on graphs [ [[Path:../../pdfs/graphs3.pdf | slides]] ]
''Reading:'' Walls and Mirrors ch. 14~~, Rosen 8.1-8.5 (relations)~~\\

to:

''Lectures:'' Dijkstra's algorithm, more problems on graphs [ [[Path:../../pdfs/graphs3.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 14 \\

April 29, 2009, at 01:07 PM MST by Asa -

Changed line 78 from:

!!!Week 13: 4/27 - 5/1

to:

!!!Week 14: 4/27 - 5/1

April 29, 2009, at 01:02 PM MST by Asa -

Added lines 77-82:

!!!Week 13: 4/27 - 5/1

''Lectures:'' Relations, Dijkstra's algorithm, more problems on graphs [ [[Path:../../pdfs/graphs3.pdf | slides]] ]
''Reading:'' Walls and Mirrors ch. 14, Rosen 8.1-8.5 (relations)\\
''Recitation:'' Review of relations and grammars.

April 22, 2009, at 11:35 AM MST by Asa -

Changed lines 74-75 from:

''Lectures:'' graphs - directed acyclic graphs and topological sorting of graphs; graph algorithms [ [[Path:../../pdfs/graphs3.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 14\\

to:

''Lectures:'' graphs - directed acyclic graphs and topological sorting of graphs; graph algorithms [ [[Path:../../pdfs/graphs3.pdf | slides]] ], relations [ [[Path:../../pdfs/relations.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 14, Rosen 8.1-8.5 (relations)\\

April 15, 2009, at 01:43 PM MST by Asa -

Changed line 74 from:

''Lectures:'' graphs - directed acyclic graphs and topological sorting of graphs \\

to:

''Lectures:'' graphs - directed acyclic graphs and topological sorting of graphs; graph algorithms [ [[Path:../../pdfs/graphs3.pdf | slides]] ]\\

April 12, 2009, at 03:40 PM MST by Asa -

Added lines 71-76:

!!!Week 12: 4/13 - 4/17

''Lectures:'' graphs - directed acyclic graphs and topological sorting of graphs \\
''Reading:'' Walls and Mirrors ch. 14\\
''Recitation:'' Implementing graphs.

April 06, 2009, at 01:00 PM MST by Asa -

Changed line 68 from:

''Lectures:'' Monday: graphs (cont). Wednesday: midterm. Friday: more graphs \\

to:

''Lectures:'' Monday: graphs (cont). Wednesday: midterm. Friday: more graphs [ [[Path:../../pdfs/graphs2.pdf | slides]] ] \\

April 02, 2009, at 03:59 PM MST by Asa -

Changed line 63 from:

''Reading:'' Walls and Mirrors ch. 13; ~~beginning~~ ch. 14\\

to:

''Reading:'' Walls and Mirrors ch. 13; ch. 14.1-14.2\\

April 02, 2009, at 03:58 PM MST by Asa -

Changed line 62 from:

''Lectures:'' Balanced search trees (cont). Friday: graphs \\

to:

''Lectures:'' Balanced search trees (cont). Friday: graphs [ [[Path:../../pdfs/graphs1.pdf | slides]] ] \\

April 02, 2009, at 03:20 PM MST by Asa -

Changed lines 62-63 from:

''Lectures:'' Balanced search trees (cont) \\
''Reading:'' Walls and Mirrors ch. 13\\

to:

''Lectures:'' Balanced search trees (cont). Friday: graphs \\
''Reading:'' Walls and Mirrors ch. 13; beginning ch. 14\\

Added lines 65-70:

!!!Week 11: 4/6 - 4/10

''Lectures:'' Monday: graphs (cont). Wednesday: midterm. Friday: more graphs \\
''Reading:'' Walls and Mirrors ch. 14\\
''Recitation:'' help with programming assignment, go over written hw, command-line arguments, review for midterm

March 28, 2009, at 10:44 AM MST by Asa -

Changed line 56 from:

''Reading:'' Walls and Mirrors ch. 6.2\\

to:

''Reading:'' Walls and Mirrors ch. 6.2, ch. 12,13\\

Added lines 58-64:

!!!Week 10: 3/30 - 4/3

''Lectures:'' Balanced search trees (cont) \\
''Reading:'' Walls and Mirrors ch. 13\\
''Recitation:'' programming quiz. You will use the [[http://www.cs.colostate.edu/~hamiltom/cs200/BinaryTree.java | binary tree]] and [[http://www.cs.colostate.edu/~hamiltom/cs200/BT_Node.java | tree node]] classes.

March 27, 2009, at 01:36 PM MST by Asa -

Changed line 55 from:

''Lectures:'' Monday: grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] Wednesday: Working in teams - a talk by Debbie Bartlett Friday: Balanced search trees [ [[Path:../../pdfs/balancedTrees.pdf | slides]] ] \\

to:

''Lectures:'' Monday: grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] Wednesday: Working in teams - a talk by Debbie Bartlett. Friday: Balanced search trees [ [[Path:../../pdfs/balancedTrees.pdf | slides]] ] \\

March 27, 2009, at 01:35 PM MST by Asa -

Changed line 55 from:

''Lectures:'' Monday: grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] Wednesday: Working in teams - a talk by Debbie Bartlett\\

to:

''Lectures:'' Monday: grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] Wednesday: Working in teams - a talk by Debbie Bartlett Friday: Balanced search trees [ [[Path:../../pdfs/balancedTrees.pdf | slides]] ] \\

March 24, 2009, at 08:42 AM MST by Asa -

Changed line 57 from:

''Recitation:''

to:

''Recitation:'' implementing a heap

March 23, 2009, at 10:03 AM MST by Asa -

Changed lines 49-50 from:

''Lectures:'' Priority queues and heaps [ [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] ~~grammars [ [[Path:~~../../pdfs/grammars.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 12.2, ch. 6.2\\

to:

''Lectures:'' Priority queues and heaps [ [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 12.2\\

Added lines 52-57:

!!!Week 9: 3/23 - 3/27

''Lectures:'' Monday: grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] Wednesday: Working in teams - a talk by Debbie Bartlett\\
''Reading:'' Walls and Mirrors ch. 6.2\\
''Recitation:''

March 13, 2009, at 11:54 AM MST by Asa -

Changed lines 49-50 from:

''Lectures:'' Priority queues and heaps [ [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] \\
~~''Reading:'' Walls and Mirrors ch~~. 12.2\\

to:

''Lectures:'' Priority queues and heaps [ [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] grammars [ [[Path:../../pdfs/grammars.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 12.2, ch. 6.2\\

March 09, 2009, at 01:18 PM MST by Asa -

Changed line 49 from:

''Lectures:'' Priority queues and heaps [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] \\

to:

''Lectures:'' Priority queues and heaps [ [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] \\

March 09, 2009, at 01:18 PM MST by Asa -

Changed line 32 from:

''Recitation:'' ~~recursion~~

to:

''Recitation:'' recursion\\

Added lines 46-51:

!!!Week 8: 3/9 - 3/13

''Lectures:'' Priority queues and heaps [[Path:../../pdfs/PQ_heaps.pdf | slides]] ] \\
''Reading:'' Walls and Mirrors ch. 12.2\\
''Recitation:'' More iterators

March 04, 2009, at 01:50 PM MST by Asa -

Changed line 44 from:

''Reading:'' Walls and Mirrors ch. 11\\

to:

''Reading:'' Walls and Mirrors ch. 11\\

March 04, 2009, at 01:50 PM MST by Asa -

Added lines 41-45:

!!!Week 7: 3/2 - 3/6

''Lectures:'' Trees, binary search trees (cont)\\
''Reading:'' Walls and Mirrors ch. 11\\
''Recitation:'' Iterators, recursion

February 23, 2009, at 01:10 PM MST by Asa -

Changed line 37 from:

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees [[[Path:../../pdfs/trees.pdf | slides]]]\\

to:

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees\\ [ [[Path:../../pdfs/trees.pdf | slides]] ]\\

February 23, 2009, at 01:09 PM MST by Asa -

Changed line 37 from:

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees [ [[Path:../../pdfs/trees.pdf | slides]] ]\\

to:

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees [[[Path:../../pdfs/trees.pdf | slides]]]\\

February 23, 2009, at 01:09 PM MST by Asa -

Changed line 35 from:

!!!Week 5: 2/23 - 2/27

to:

!!!Week 6: 2/23 - 2/27

February 23, 2009, at 01:08 PM MST by Asa -

Changed line 37 from:

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees [[Path:../../pdfs/trees.pdf | slides]] ]\\

to:

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees [ [[Path:../../pdfs/trees.pdf | slides]] ]\\

February 23, 2009, at 01:07 PM MST by Asa -

Added lines 34-39:

!!!Week 5: 2/23 - 2/27

''Lectures:'' Wednesday: Midterm. Mon, Fri: Trees, binary search trees [[Path:../../pdfs/trees.pdf | slides]] ]\\
''Reading:'' Walls and Mirrors ch. 11\\
''Recitation:'' Review for midterm, recursion

February 18, 2009, at 12:43 PM MST by Asa -

Changed lines 32-34 from:

''Recitation:''

to:

''Recitation:'' recursion
''Assignments:'' Second written assignment is [[assignments | available]]

February 13, 2009, at 11:10 AM MST by Asa -

Added lines 27-32:

!!!Week 5: 2/16 - 2/20

''Lectures:'' Sorting algorithms using divide and conquer strategies (cont)\\
''Reading:'' Walls and Mirrors 10.2, Rosen 7.1, 7.3\\
''Recitation:''

February 11, 2009, at 10:33 AM MST by Asa -

Changed line 24 from:

''Lectures:'' Queues (cont). Advanced sorting algorithms using divide and ~~conquor~~ strategies; evaluating complexity of recursive algorithms [ [[Path:../../pdfs/divide-conquer.pdf | slides]] ]\\

to:

''Lectures:'' Queues (cont). Advanced sorting algorithms using divide and conquer strategies; evaluating complexity of recursive algorithms [ [[Path:../../pdfs/divide-conquer.pdf | slides]] ]\\

February 11, 2009, at 10:16 AM MST by Asa -

Changed line 24 from:

''Lectures:'' Queues (cont). Advanced sorting algorithms using divide and conquor strategies; evaluating complexity of recursive algorithms\\

to:

''Lectures:'' Queues (cont). Advanced sorting algorithms using divide and conquor strategies; evaluating complexity of recursive algorithms [ [[Path:../../pdfs/divide-conquer.pdf | slides]] ]\\

February 08, 2009, at 01:12 PM MST by Asa -

Added line 19:

Changed lines 22-26 from:

!!!Week 4: 2/2 - 2/6

Lecture: [ slides ]
Reading: Walls and Mirrors 10.2, Rosen 7.1, 7.3

to:

!!!Week 4: 2/9 - 2/13

Changed line 26 from:

''Recitation:'' ~~Review of big-O analysis, generics, stacks~~\\

to:

''Recitation:'' Programming a queue; work on programming assignment\\

February 08, 2009, at 01:10 PM MST by Asa -

Deleted line 15:

Added lines 20-28:

!!!Week 4: 2/2 - 2/6

Lecture: [ slides ]
Reading: Walls and Mirrors 10.2, Rosen 7.1, 7.3

''Lectures:'' Queues (cont). Advanced sorting algorithms using divide and conquor strategies; evaluating complexity of recursive algorithms\\
''Reading:'' Walls and Mirrors 10.2, Rosen 7.1, 7.3\\
''Recitation:'' Review of big-O analysis, generics, stacks\\

February 08, 2009, at 01:04 PM MST by Asa -

Changed line 19 from:

''Recitation:'' Review of big-O analysis, generics, ~~stacks~~

to:

''Recitation:'' Review of big-O analysis, generics, stacks\\

February 08, 2009, at 01:03 PM MST by Asa -

Added line 20:

''Assignments:'' Second programming assignment is [[assignments | available]]

February 04, 2009, at 10:42 AM MST by 129.82.47.246 -

Changed line 19 from:

''Recitation:'' Review of big-O analysis, ~~generics~~

to:

''Recitation:'' Review of big-O analysis, generics, stacks

February 02, 2009, at 06:26 AM MST by Asa -

Added line 3:

''Lectures:'' Course introduction; abstract data types (ADTs) [ [[Path:../../pdfs/introduction.pdf | slides]] ]\\

Deleted line 4:

~~''Lectures:'' Course introduction; abstract data types (ADTs) [ [[Path:../../pdfs/introduction.pdf | slides]] ]\\~~

Added line 10:

''Lectures:'' Measuring the efficiency of algorithms [ [[Path:../../pdfs/complexity.pdf | slides]] ]\\

Deleted line 11:

~~''Lectures:'' Measuring the efficiency of algorithms [ [[Path:../../pdfs/complexity.pdf | slides]] ]\\~~

Added lines 13-19:

!!!Week 3: 2/2 - 2/6

''Lectures:'' Stacks and Queues [ [[Path:../../pdfs/stacksAndQueues.pdf | slides]] ]\\
''Reading:'' chapters 7 and 8 in Walls and Mirrors\\
''Recitation:'' Review of big-O analysis, generics

February 01, 2009, at 10:53 PM MST by 76.25.18.114 -

Changed line 12 from:

''Recitation:'' Using checkin, review of linked lists~~, file IO~~, help on programming assignment\\

to:

''Recitation:'' Using checkin, review of linked lists, help on programming assignment\\

January 30, 2009, at 12:54 PM MST by Asa -

Changed line 12 from:

''Recitation:'' Using checkin, review of linked lists ~~and~~ file IO\\

to:

''Recitation:'' Using checkin, review of linked lists, file IO, help on programming assignment\\

January 30, 2009, at 12:53 PM MST by Asa -

Changed line 8 from:

!!!Week 1: 1/26 - 1/30

to:

!!!Week 2: 1/26 - 1/30

January 26, 2009, at 01:30 PM MST by Asa -

Changed line 12 from:

''Recitation:'' \\

to:

''Recitation:'' Using checkin, review of linked lists and file IO\\

January 25, 2009, at 09:42 PM MST by Asa -

Changed line 10 from:

''Reading:'' Sections 3.2,3.3 in ~~Rose~~, Section 10.1 in Walls and Mirrors.\\

to:

''Reading:'' Sections 3.2,3.3 in Rosen, Section 10.1 in Walls and Mirrors.\\

January 25, 2009, at 09:41 PM MST by Asa -

Added lines 7-13:

!!!Week 1: 1/26 - 1/30

''Reading:'' Sections 3.2,3.3 in Rose, Section 10.1 in Walls and Mirrors.\\
''Lectures:'' Measuring the efficiency of algorithms [ [[Path:../../pdfs/complexity.pdf | slides]] ]\\
''Recitation:'' \\

January 21, 2009, at 01:21 PM MST by Asa -

Changed line 4 from:

''Lectures:'' Course introduction; abstract data types (ADTs) [[Path:../../pdfs/introduction.pdf | slides]] \\

to:

''Lectures:'' Course introduction; abstract data types (ADTs) [ [[Path:../../pdfs/introduction.pdf | slides]] ]\\

January 21, 2009, at 01:20 PM MST by Asa -

Changed line 4 from:

''Lectures:'' Course introduction; abstract data types (ADTs)\\

to:

''Lectures:'' Course introduction; abstract data types (ADTs) [[Path:../../pdfs/introduction.pdf | slides]] \\

January 20, 2009, at 10:00 AM MST by Asa -

Changed line 3 from:

''Reading:'' Chapter 4 in Walls and Mirrors.

to:

''Reading:'' Chapter 4 in Walls and Mirrors.\\

Changed line 5 from:

''Recitation:'' No recitations this ~~week~~

to:

''Recitation:'' No recitations this week\\

January 20, 2009, at 09:59 AM MST by Asa -

Changed line 4 from:

''Lectures:'' Course introduction; abstract data types (ADTs)

to:

''Lectures:'' Course introduction; abstract data types (ADTs)\\

January 20, 2009, at 09:59 AM MST by Asa -

Changed lines 3-5 from:

-> ''Reading:'' Chapter 4 in Walls and Mirrors.
-> ''Lectures:'' Course introduction; abstract data types (ADTs)
-> ''Recitation:'' No recitations this ~~week~~

to:

''Reading:'' Chapter 4 in Walls and Mirrors.
''Lectures:'' Course introduction; abstract data types (ADTs)
''Recitation:'' No recitations this week
''Assignments:'' First programming assignment is [[assignments | available]]

January 15, 2009, at 03:09 PM MST by Asa -

Changed line 1 from:

!!!Week 1: 1/21 - 8/23

to:

!!!Week 1: 1/21 - 1/23

January 15, 2009, at 03:09 PM MST by Asa -

Changed line 1 from:

!!!Week 1: 8/25 - 8/29

to:

!!!Week 1: 1/21 - 8/23

January 15, 2009, at 03:08 PM MST by Asa -

Changed lines 1-2 from:

~~Coming soon~~!

to:

!!!Week 1: 8/25 - 8/29

-> ''Reading:'' Chapter 4 in Walls and Mirrors.
-> ''Lectures:'' Course introduction; abstract data types (ADTs)
-> ''Recitation:'' No recitations this week

December 31, 2008, at 03:43 PM MST by Asa -

Added lines 1-2:

Coming soon!

Main.Schedule History