Fall 2017 Schedule


Topics Reading (TLCL) Assignments
Week 1:
Tuesday
August 22 (EN)
Course introduction
The terminal
Navigating the file system
Further Exercises
Chapters 1, 2
Thursday
August 24 (EN)
Options
Making & removing
Copying & moving
Wildcards
Getting help
Working with files I
Chapter 3 (ls)
Chapters 4-5
Assignment 1
Enrichment 1
Week 2:
Tuesday
August 29 (EN)
Redirection
Working with files II
Pipes
More pipes
Further Exercises2
Chapter 3 (less)
Chapter 6
Thursday
August 31 (EN)
Scripting
Intro to supercomputing
Using summit
Supercomputing demo
Best practices
Chapter 24
Summit Guide
Assignment 2
Enrichment 2
Week 3:
Tuesday
September 5 (TM)
Connecting to remote servers slides
Genomics datasets
Chapters 16, 18 Assignment 3
Thursday
September 7 (TM)
Substitutions and regular expressions slides
Introduction to scripting
Chapter 19, 24 Assignment 4
Week 4:
Tuesday
September 12 (TM)
Programming in awk and sed slides Chapter 27-29 Assignment 5
Thursday
September 14 (TM)
Conclusions and future directions
Comprehensive final exam practice