Class activities

Information about lectures, projects, and presentations.

Week 1 : Jan. 16
Lectures Introduction to Biology I
Week 2 : Jan. 23
Lectures Introduction to Biology II;Introduction to Biology III
Week 3 : Jan. 30
Lectures Sequence Alignment;Local Alignment
Week 4 : Feb. 6
Lectures Local Alignment
Week 5 : Feb. 13
Lectures RNA folding (basepair maximization);RNA folding (nearest neighbor)
Week 6 : Feb. 20
Lectures RNA folding (nearest neighbor);Hidden Markov Models
Week 7 : Feb. 27
Lectures Hidden Markov Models
Week 8 : Mar. 6
Lectures Midterm
Week 9 : Mar. 13
Lectures Spring break
Week 10 : Mar. 20
Lectures DNA Sequencing
Week 11 : Mar. 27
Lectures Read mapping: Burrows-Wheeler Transformation and FM index;Aidan's presentation
Week 12 : Apr. 3
Lectures Don and Rae's presentations
Week 13 : Apr. 10
Lectures Suffix trees;Sequencing applications
Week 14 : Apr. 17
Lectures Sequence Assembly;Graph Traversal Edit Distance
Week 15 : Apr. 24
Lectures Graph Traversal Edit Distance;Sequence Assembly
Week 16 : May 1
Lectures Single Cell;Transcriptome Analysis