CSU CS Unix Software Catalogue This catalogue contains a list of all software packages and products installed on the CSU Computer Science Unix Systems. Please contact sna@cs.colostate.edu with any corrections or additional software that you would like installed. To list the software packages on a Fedora or RedHat machine that have been installed from the standard repositories use the following command: rpm -qa | grep -i packagename All additional software that has been installed is listed alphabetically below in the following format: Package -- Description OS Architecture paths Notes Alice -- Java teaching software Fedora x86_64 /usr/local/Alice Notes: Run with /usr/local/Alice/Required/run-alice allegro -- game programming library Fedora x86_64 /s/parsons/l/sys/allegro android -- Google Android development kit Fedora x86_64 /usr/local/android ArgoUML -- UML diagramming application Fedora x86_64 /usr/local/ArgoUML armadillo -- C++ linear algebra library Fedora x86_64 /usr/local/armadillo atlas -- Automatically Tuned Linear Algebra Subroutines Fedora x86_64 /usr/local/atlas Autodia -- automatic generation of UML diagrams Fedora x86_64 /usr/local/Autodia bibtex2html Fedora x86_64 /usr/local/localtex/bibtex2html-1.56-linux boost -- C++ multi-purpose library Fedora x86_64 RedHat ia64 /usr/local/boost cabal -- Haskell package management tool Fedora x86_64 /usr/local/cabal ch -- C/C++ interpreter Fedora x86_64 /usr/local/ch clafer -- language for software modeling and analysis Fedora x86_64 /usr/local/clafer clapack -- C linear algebra library Fedora x86_64 /usr/local/clapack cmake -- build system Fedora x86_64 /usr/local/cmake cpuburn -- CPU load testing tool Fedora x86_64 RedHat ia64 /usr/local/cpuburn ctypeslib -- python C interoperability Fedora x86_64 /usr/local/ctypeslib cuda -- Compute Unified Device Architecture, GPU programming tools Fedora x86_64 /usr/local/cuda Notes: See ~info/cuda-faq.html for setup instructions cvxopt -- convex optimization tools for python Fedora x86_64 /usr/local/cvxopt dia2code -- generage code stubs from UML diagrams Fedora x86_64 /usr/local/dia2code eclipse -- integrated development environment Fedorax x86_64 /usr/local/bin/eclipse.sh Notes: /usr/bin/eclipse may hang if /usr/local/java/bin/java comes before /usr/bin/java in your PATH environment variable FDR -- Failures-Divergences Refinement, model checking Fedora x86_64 /usr/local/FDR ffmpeg -- video/audio encoder/decoder library Fedora x86_64 /usr/local/ffmpeg Notes: Add the following to .bashrc export PATH=/usr/local/ffmpeg/bin:${PATH} export LD_LIBRARY_PATH=/usr/local/ffmpeg/lib:${LD_LIBRARY_PATH} or in .cshrc set path = ( /usr/local/ffmpeg/bin $path ) setenv LD_LIBRARY_PATH /usr/local/ffmpeg/lib:${LD_LIBRARY_PATH} firefox -- web browser Fedora x86_64 /usr/local/firefox Notes: Uses Oracle java plugin fltk -- C++ gui library Fedora x86_64 /usr/local/fltk gap -- Groups, Algorithms, Programming Fedora x86_64 /usr/local/gap gcc -- gnu c compiler collection Fedora x86_64 RedHat ia64 /usr/local/gcc gd -- php image library Fedora x86_64 /usr/local/gd git -- revision control system Mac OSX i386 RedHat ia64 /usr/local/git genesis -- GEneral NEural SImulation System Fedora i386 /usr/local/genesis Notes: Copy ~info/dot.files/.simrc to home directory gmp -- arbitrary precision math library RedHat ia64 /usr/local/gmp go -- google go programming language Fedora x86_64 /usr/local/go hadoop -- Map Reduce framework Fedora x86_64 /usr/local/hadoop intel -- Intel compiler suite Fedora x86_64 /s/parsons/l/sys/intel iozone -- I/O benchmarking Fedora x86_64 /usr/local/iozone ipython -- interactive python interpreter Fedora x86_64 /usr/local/ipython JabRef -- graphical BibTeX front-end Fedora x86_64 /usr/local/JabRef java -- Oracle Java Fedora i386 RedHat ia64 /usr/local/java Fedora x86_64 /usr/local/java64 JFLAP -- formal language experimentation Fedora x86_64 /usr/local/JFLAP lapack -- linear algebra library Fedora x86_64 /usr/local/lapack LC3 -- little computer, assembly language interpreter Fedora x86_64 /usr/local/LC3 Notes: Insert the following aliases in your .cshrc or .bashrc file: alias simulator '/usr/local/java/bin/java -classpath /usr/local/LC3/lc3.jar simulator.Main' alias assembler '/usr/local/java/bin/java -classpath /usr/local/LC3/lc3.jar assembler.Assembler' alias convert '/usr/local/java/bin/java -classpath /usr/local/LC3/lc3.jar assembler.ASCIIToBin' alias archsim '/usr/local/java/bin/java -classpath /usr/local/LC3/lc3arch.jar LC3ArchitecturalSimulatorGUI' libmpq -- library for manipulating MPQ archives Fedora x86_64 /usr/local/libmpq matplotlib -- python plotting library Fedora x86_64 /usr/local/matplotlib maple -- symbolic mathematics Fedora i386 /s/parsons/l/sys/maple11 Fedora x86_64 /s/parsons/l/sys/maple11_64 matlab -- computational mathematics and programming language Fedora i686 /s/parsons/l/sys/matlab Fedora x86_64 /s/parsons/l/sys/matlab64 maven -- software project management Fedora x86_64 /usr/local/maven mercurial -- revision control system Fedora x86_64 /usr/local/mercurial mpdist -- PostScript printing tools Fedora x86_64 /usr/local/mpdist mpfr -- multiple-precision math library RedHat ia64 /usr/local/mpfr mplayer -- multimedia player Fedora x86_64 /usr/local/mplayer netbeans -- integrated development environment Fedora x86_64 /usr/local/netbeans ns -- network simulator Fedora x86_64 /usr/local/ns numpy -- python numerical library Fedora x86_64 /usr/local/numpy numpy-mkl Fedora x86_64 /usr/local/numpy-mkl (version linked against the Intel Math Kernel Library) ocaml -- programming language RedHat ia64 /usr/local/ocaml OpenCV -- computer vision library Fedora x86_64 /usr/local/OpenCV ODE -- ODE is an open source, high performance library for simulating rigid body dynamics. Fedora x86_64 /usr/local/ODE Notes: The following environmental variables need to be exported: export LD_LIBRARY_PATH=/usr/local/ODE/lib:${LD_LIBRARY_PATH} passenger -- apache ruby module Fedora x86_64 /usr/local/passenger perl -- practical report and extraction language Fedora x86_64 /usr/local/perl povray -- raytracer Fedora x86_64 /usr/local/povray PyML -- python machine learning library Fedora x86_64 /usr/local/PyML Notes: Add the following to .bashrc export PYTHONPATH=/usr/local/PyML/lib64/python2.7/site-packages/ or in .cshrc setenv PYTHONPATH /usr/local/PyML/lib64/python2.7/site-packages/ pypar -- openmpi python bindings Fedora x86_64 /usr/local/pypar Notes: Add the following to .bashrc export PYTHONPATH=/usr/local/pypar/lib64/python2.7/site-packages/:${PYTHONPATH} or in .cshrc setenv PYTHONPATH /usr/local/pypar/lib64/python2.7/site-packages/:${PYTHONPATH} Pyrex -- a Language for Writing Python Extension Modules Fedora x86_64 /usr/local/Pyrex Notes: Add the following to .bashrc to help python to locate the Pyrex modules: export PYTHONPATH=/usr/local/Pyrex/lib/python2.7/site-packages/:${PYTHONPATH} PyQt -- python Qt bindings Fedora x86_64 /usr/local/PyQt python -- programming language Fedora x86_64 /usr/local/python PyODE -- Python bindings for The Open Dynamics Engine, an open-source physics engine. Fedora x86_64 /usr/local/PyODE Notes: Add the following to .bashrc to help python to locate the PyODE modules: export PYTHONPATH=/usr/local/Pyrex/lib/python2.7/site-packages:/usr/local/PyODE/lib64/python2.7/site-packages/:${PYTHONPATH} export LD_LIBRARY_PATH=/usr/local/ODE/lib/:/usr/local/PyODE/lib64/:${LD_LIBRARY_PATH} passenger -- apache ruby module Fedora x86_64 /usr/local/passenger perl -- practical report and extraction language Fedora x86_64 /usr/local/perl povray -- raytracer Fedora x86_64 /usr/local/povray PyML -- python machine learning library Fedora x86_64 /usr/local/PyML Notes: Add the following to .bashrc export PYTHONPATH=/usr/local/PyML/lib64/python2.7/site-packages/ or in .cshrc setenv PYTHONPATH /usr/local/PyML/lib64/python2.7/site-packages/ pypar -- openmpi python bindings Fedora x86_64 /usr/local/pypar Notes: Add the following to .bashrc export PYTHONPATH=/usr/local/pypar/lib64/python2.7/site-packages/:${PYTHONPATH} or in .cshrc setenv PYTHONPATH /usr/local/pypar/lib64/python2.7/site-packages/:${PYTHONPATH} Pyrex -- a Language for Writing Python Extension Modules Fedora x86_64 /usr/local/Pyrex PyQt -- python Qt bindings Fedora x86_64 /usr/local/PyQt python -- programming language Fedora x86_64 /usr/local/python PyODE -- Python bindings for The Open Dynamics Engine, an open-source physics engine. Fedora x86_64 /usr/local/PyODE Notes: Add the following to .bashrc to help python to locate the PyODE modules: export PYTHONPATH=/usr/local/PyODE/lib64/python2.7/site-packages/:${PYTHONPATH} qt -- graphics library RedHat ia64 /usr/local/qt R -- programming language Fedora x86_64 RedHat ia64 /usr/local/R racket -- scheme programming language Fedora x86_64 /usr/local/racket RealPlayer -- multimedia player Fedora x86_64 /usr/local/RealPlayer scikits.lean -- machine learning library for python Fedora x86_64 /usr/local/scikits.learn Notes: Add the following to .bashrc export PYTHONPATH=/usr/local/scikits.learn/lib64/python2.7/site-packages:${PYTHONPATH} or in .cshrc setenv PYTHONPATH /usr/local/scikits.learn/lib64/python2.7/site-packages:${PYTHONPATH} sml -- Standard ML programming language Fedora x86_64 /usr/local/sml spim -- MIPS simulator Fedora x86_64 /usr/local/spim systemc -- C++ simulation library Fedora x86_64 /usr/local/systemc thrust -- C++ template library for CUDA. Thrust is a parallel algorithms library which resembles the C++ Standard Template Library (STL) Fedora x86_64 /usr/local/thrust umbrello -- UML modeler Fedora x86_64 /usr/local/umbrello whizzytex -- emacs TeX plugin Fedora x86_64 /usr/local/whizzytex xforms -- xforms tools Fedora x86_64 /usr/local/xforms xgobi -- data visualization Fedora x86_64 /usr/local/xgobi xilinx -- FPGA tools Fedora x86_64 /usr/local/xilinx xine -- multimedia player Fedora x86_64 /usr/local/xine xmms -- multimedia player Fedora x86_64 /usr/local/xmms xmpi -- run/debug GUI for mpi Fedora x86_64 /usr/local/xmpi z-eves -- theorem proving tool Fedora x86_64 /usr/local/z-eves qt -- graphics library RedHat ia64 /usr/local/qt R -- programming language Fedora x86_64 RedHat ia64 /usr/local/R racket -- scheme programming language Fedora x86_64 /usr/local/racket RealPlayer -- multimedia player Fedora x86_64 /usr/local/RealPlayer scikits.lean -- machine learning library for python Fedora x86_64 /usr/local/scikits.learn Notes: Add the following to .bashrc export PYTHONPATH=/usr/local/scikits.learn/lib64/python2.7/site-packages:${PYTHONPATH} or in .cshrc setenv PYTHONPATH /usr/local/scikits.learn/lib64/python2.7/site-packages:${PYTHONPATH} sml -- Standard ML programming language Fedora x86_64 /usr/local/sml spim -- MIPS simulator Fedora x86_64 /usr/local/spim systemc -- C++ simulation library Fedora x86_64 /usr/local/systemc thrust -- C++ template library for CUDA. Thrust is a parallel algorithms library which resembles the C++ Standard Template Library (STL) Fedora x86_64 /usr/local/thrust umbrello -- UML modeler Fedora x86_64 /usr/local/umbrello whizzytex -- emacs TeX plugin Fedora x86_64 /usr/local/whizzytex xforms -- xforms tools Fedora x86_64 /usr/local/xforms xgobi -- data visualization Fedora x86_64 /usr/local/xgobi xilinx -- FPGA tools Fedora x86_64 /usr/local/xilinx xine -- multimedia player Fedora x86_64 /usr/local/xine xmms -- multimedia player Fedora x86_64 /usr/local/xmms xmpi -- run/debug GUI for mpi Fedora x86_64 /usr/local/xmpi z-eves -- theorem proving tool Fedora x86_64 /usr/local/z-eves