python read_marker.py ../../data/Human_Reference_Genome/chr1.fa /s/oak/a/nobackup/data/EC_ECOLI_MC_READS/corrected/mc.orig.1.fq.00.cor.fastq /s/oak/a/nobackup/data/EC_ECOLI_MC_READS/corrected/mc.orig.2.fq.00.cor.fastq data/ch1.lss
