python read_marker.py /s/oak/a/nobackup/data/Arabidopsis_Reference/Genome.fa /s/oak/a/nobackup/data/Arabidopsis_illumina/Swe/error_corrected_reads/corrected/Swe_all_lanes1.fastq.00.cor.fastq  /s/oak/a/nobackup/data/Arabidopsis_illumina/Swe/error_corrected_reads/corrected/Swe_all_lanes2.fastq.00.cor.fastq 
