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wiki:2016final [2016/09/12 14:22]
tai created
wiki:2016final [2016/09/12 15:02] (current)
tai
Line 40: Line 40:
   * GitHub (repository for code and software) https://​github.com   * GitHub (repository for code and software) https://​github.com
   ​   ​
 +  ​
 +  ====3. Installing software====
 +  ​
 +Download the software appropriate for your computer system.
 +
 +**Common repositories for bioinformatics software:​** ​
 +  * GitHub https://​github.com
 +  * Source Forge https://​sourceforge.net
 +
 +**Getting software from the command line using package managers:​** ​
 +  * apt-get (Linux)
 +  * Homebrew (Mac)
 + 
 +**Installing software manually:​** ​
 +  * Download software
 +  * Unpackage
 +  * See README file for compatibility and dependency information
 +  * See INSTALL file for installation instructions
 + 
 + ​Standard installation:​
 + 
 +  * Step 1: Configure software for installation.
 +  * Step 2: Build the softare from the source code using the Makefile included in the distribution.
 +  * Step 3: Install the software on your machine and move the files to the correct locations.
 +  ​
 +Typically done using the following commands:
 +  $ ./configure
 +  $ make
 +  $ make install
 + 
 +* Mac users must install xcode tools:\\
 +  ​
 +  $ xcode-select –install
wiki/2016final.txt · Last modified: 2016/09/12 15:02 by tai