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You can install HTSeq with either pip or conda, whichever you prefer.
Try the following…
$ pip install htseq $ htseq-count --help
OR, if you have conda set up…
$ conda install -c bioconda HTSeq $ htseq-count --help
If your installation or execution of the
htseq-count command doesn't go smoothly, you may be missing some prerequisites.
To test whether you have these, do the following…
$ python >>> import numpy >>> import pysam >>> import matplotlib >>> quit() $
If you get error messages saying that any of the following aren't installed, install them first before proceeding. You can install them using pip or conda.
back to Intro to HTSeq